Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVE98_RS18115 Genome accession   NZ_CP118618
Coordinates   3719397..3719951 (-) Length   184 a.a.
NCBI ID   WP_033749160.1    Uniprot ID   -
Organism   Pantoea sp. GABEPS69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3714397..3724951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE98_RS18100 (PVE98_18055) - 3715995..3716390 (+) 396 WP_033749162.1 transposase -
  PVE98_RS18105 (PVE98_18060) - 3717315..3718274 (-) 960 WP_033749161.1 DMT family transporter -
  PVE98_RS18110 (PVE98_18065) - 3718355..3719182 (-) 828 WP_096073861.1 AraC family transcriptional regulator -
  PVE98_RS18115 (PVE98_18070) ssb 3719397..3719951 (-) 555 WP_033749160.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PVE98_RS18120 (PVE98_18075) uvrA 3720178..3723015 (+) 2838 WP_313619318.1 excinuclease ABC subunit UvrA -
  PVE98_RS18125 (PVE98_18080) - 3723291..3724355 (+) 1065 WP_033793196.1 NAD(P)-dependent alcohol dehydrogenase -
  PVE98_RS18130 (PVE98_18085) - 3724397..3724732 (-) 336 WP_033749157.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19646.58 Da        Isoelectric Point: 5.2358

>NTDB_id=794007 PVE98_RS18115 WP_033749160.1 3719397..3719951(-) (ssb) [Pantoea sp. GABEPS69]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQQGGASAGGAPMGGGQQSGGNNNGWGQPQQPQGGNQFSGGAQSR
PQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=794007 PVE98_RS18115 WP_033749160.1 3719397..3719951(-) (ssb) [Pantoea sp. GABEPS69]
ATGGCCAGTCGTGGCGTAAATAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTTGCCAACATTACGCTGGCCACCTCGGAAAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGATCGCTATACCACGGAAGTGGTGGTCAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGCGCCAGCGCAGGCGGCGCGCCGATGGGCGGCGGCCAGCAGA
GCGGCGGCAACAACAACGGCTGGGGCCAGCCGCAGCAGCCGCAGGGTGGAAACCAGTTCAGCGGCGGCGCGCAGTCGCGT
CCGCAGCCGCAGAGCGCCCCGGCGAGCAACAACAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.723
  ssb Glaesserella parasuis strain SC1401

57.672

100

0.592
  ssb Neisseria meningitidis MC58

45.946

100

0.462
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.462
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.216

100

0.364