Detailed information NTG0793946

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PVV54_RS25715
• Genome accession: NZ_CP118607
• Coordinates: 5709671..5711161 (+)
• Length: 496 a.a.
• NCBI ID: WP_274907881.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PSKL.D1
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 5704671..5716161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVV54_RS25700 (PVV54_25700)	-	5706592..5707644 (-)	1053	WP_274907878.1	flagellin	-
PVV54_RS25705 (PVV54_25705)	-	5707917..5708741 (+)	825	WP_274907879.1	MotA/TolQ/ExbB proton channel family protein	-
PVV54_RS25710 (PVV54_25710)	-	5708738..5709583 (+)	846	WP_274907880.1	OmpA family protein	-
PVV54_RS25715 (PVV54_25715)	comM	5709671..5711161 (+)	1491	WP_274907881.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PVV54_RS25720 (PVV54_25720)	-	5711291..5711551 (+)	261	WP_274907882.1	DUF2790 domain-containing protein	-
PVV54_RS25725 (PVV54_25725)	-	5711768..5713069 (+)	1302	WP_274907883.1	Nramp family divalent metal transporter	-
PVV54_RS25730 (PVV54_25730)	-	5713249..5713500 (+)	252	WP_274907884.1	helix-turn-helix domain-containing protein	-
PVV54_RS25735 (PVV54_25735)	-	5713497..5714693 (+)	1197	WP_274907885.1	type II toxin-antitoxin system HipA family toxin	-
PVV54_RS25740 (PVV54_25740)	-	5714742..5715014 (-)	273	WP_274907886.1	DUF3077 domain-containing protein	-
PVV54_RS25745 (PVV54_25745)	-	5715018..5715290 (-)	273	WP_274907887.1	hypothetical protein	-
PVV54_RS25750 (PVV54_25750)	-	5715740..5716111 (-)	372	WP_274907888.1	response regulator	-

Sequence

Protein

• Length: 496 a.a.
• Molecular weight: 52945.80 Da
• Isoelectric Point: 7.7464

>NTDB_id=793946 PVV54_RS25715 WP_274907881.1 5709671..5711161(+) (comM) [Pseudomonas sp. PSKL.D1]
MSLALVHSRAQVGVQAPAVSVETHLTNGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADGQLPVAALAEMECLGELALSGKLRPVQGVLPAALAAREAGRAMVVPRENAEEASLASGLVVYAVGHL
LELVAHLNGQVPLAPFAANGLVLQSQPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLTSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNHQPCG
ETSAEVAAMVAQARGVQHQRQGCANAFLDLDGLRNHCRLQAVDQTWLETACERLSLSLRAAHRLMKVARTLADLDGSTTI
AKAHLAEALQYRPGST

Nucleotide

• Length: 1491 bp

>NTDB_id=793946 PVV54_RS25715 WP_274907881.1 5709671..5711161(+) (comM) [Pseudomonas sp. PSKL.D1]
ATGTCCTTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCGCCAGCGGTCAGTGTTGAAACCCACCTGACCAA
CGGCTTGCCCCACCTCACACTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAAGACCGGGTGCGCAGCGCCATCG
TCAATTCAGGCCTGAATTACCCGGCGCGGCGCATTACCCAGAACCTGGCGCCCGCCGACTTGCCCAAGGATGGCGGGCGT
TACGACCTGGCCATTGCTCTGGGCATCCTGGCGGCCGATGGCCAGTTGCCTGTTGCAGCGCTTGCTGAAATGGAGTGCCT
GGGTGAATTGGCGCTGTCGGGCAAACTGCGCCCCGTGCAGGGTGTTTTGCCGGCGGCGCTGGCCGCACGCGAGGCAGGCC
GGGCGATGGTGGTACCGCGCGAAAACGCCGAAGAAGCAAGCCTGGCCAGCGGGCTGGTGGTGTACGCCGTGGGCCATTTG
CTGGAGTTGGTTGCCCACCTCAACGGGCAGGTGCCGCTGGCGCCGTTCGCAGCCAATGGTTTGGTGCTTCAGAGCCAGCC
CTACCCTGATTTGAGCGAGGTGCAAGGCCAGGTTGCAGCCAAGCGCGCGTTGCTGCTGGCTGCCGCCGGGGCGCACAACC
TGCTTTTCACGGGGCCTCCGGGCACTGGCAAAACACTGCTCGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGATGAG
CACGAAGCATTGGAGGTGGCTGCGATCCAGTCGGTGAGCGGGCACAAACCGCTAACCAGCTGGCCACAACGGCCCTTTCG
CCATCCGCACCATTCCGCATCCGGCCCTGCGCTGGTCGGCGGCAGCAGCAGACCGCAACCCGGCGAAATCACGCTGGCTC
ATCATGGGGTGCTGTTTCTGGACGAATTACCCGAGTTTGAACGGCGTGTGCTCGAGGTGCTGCGCGAGCCGCTGGAATCG
GGCGAAATCGTGATCGCCCGCGCCCGCGACAAGGTGCGCTTCCCGGCCCGTTTTCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCACCGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAACTGT
CCGGCCCCCTGCTGGACCGCATCGACTTGCACCTGACCGTGGCCCGGGAAACCACTACCCTCAACCATCAACCCTGCGGC
GAAACCAGTGCCGAGGTAGCAGCGATGGTTGCCCAAGCCCGGGGAGTTCAACACCAGCGGCAAGGCTGTGCCAATGCCTT
TCTGGACCTCGACGGGCTGCGCAATCATTGCCGGCTGCAGGCGGTGGATCAAACCTGGCTAGAGACCGCCTGCGAACGCC
TGAGCCTTTCGCTGCGTGCTGCGCACCGGCTGATGAAAGTGGCGCGCACACTGGCCGACCTGGACGGCAGCACGACCATC
GCCAAAGCCCACCTTGCCGAAGCGCTGCAGTATCGCCCTGGCAGCACTTAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (400-492)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	55.2	100	0.556
comM	Vibrio campbellii strain DS40M4	55.556	99.798	0.554
comM	Vibrio cholerae strain A1552	54.949	99.798	0.548
comM	Glaesserella parasuis strain SC1401	53.493	100	0.54
comM	Legionella pneumophila str. Paris	48.185	100	0.482
comM	Legionella pneumophila strain ERS1305867	48.185	100	0.482
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.414	100	0.47