Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PVT68_RS10250 Genome accession   NZ_CP118605
Coordinates   2458090..2459580 (+) Length   496 a.a.
NCBI ID   WP_280317729.1    Uniprot ID   -
Organism   Microbulbifer bruguierae strain H12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2453090..2464580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT68_RS10220 (PVT68_10220) - 2453792..2454004 (-) 213 WP_280317718.1 hypothetical protein -
  PVT68_RS10225 (PVT68_10225) - 2454416..2454754 (-) 339 WP_043319767.1 P-II family nitrogen regulator -
  PVT68_RS10230 (PVT68_10230) - 2454876..2456135 (-) 1260 WP_280317721.1 ammonium transporter -
  PVT68_RS10235 (PVT68_10235) - 2456225..2456563 (-) 339 WP_280317723.1 P-II family nitrogen regulator -
  PVT68_RS10240 (PVT68_10240) - 2456620..2457354 (-) 735 WP_280317725.1 TorF family putative porin -
  PVT68_RS10245 (PVT68_10245) - 2457632..2458018 (+) 387 WP_280317727.1 accessory factor UbiK family protein -
  PVT68_RS10250 (PVT68_10250) comM 2458090..2459580 (+) 1491 WP_280317729.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PVT68_RS10255 (PVT68_10255) - 2459656..2460201 (-) 546 WP_280317731.1 GNAT family N-acetyltransferase -
  PVT68_RS10260 (PVT68_10260) bla 2460214..2461086 (-) 873 WP_280317733.1 subclass B3 metallo-beta-lactamase -
  PVT68_RS10265 (PVT68_10265) - 2461088..2461591 (-) 504 WP_280317734.1 GNAT family N-acetyltransferase -
  PVT68_RS10270 (PVT68_10270) - 2461596..2462051 (-) 456 WP_280317736.1 YaiI/YqxD family protein -
  PVT68_RS10275 (PVT68_10275) - 2462051..2462272 (-) 222 WP_280317738.1 DUF3565 domain-containing protein -
  PVT68_RS10280 (PVT68_10280) - 2462331..2463752 (-) 1422 WP_280317740.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53162.78 Da        Isoelectric Point: 8.2416

>NTDB_id=793917 PVT68_RS10250 WP_280317729.1 2458090..2459580(+) (comM) [Microbulbifer bruguierae strain H12]
MSLSITYARAQLGIDAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR
YDLAIALGILAASGQVPGEALEHYEFIGELALSGSLRPIPGALPAAMACRNSSRILVTARESASEAALINTPVKVASSLL
QVCAQLHGREALPDAQQDTEQAPVVCADLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLTEGE
LIEVAALYSSAGLSRIRQRPFRAPHHSASPTALVGGGSDPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI
SRARAQVTFPADFQLVAAMNPCPCGYLGEPRCRCTPDRIDRYRNKLSGPLLDRIDMQVEVASMSASQLQQAAPGEDSDRV
RQRVQIARQCQLNRQGKINADLKGSELDEHCRLGNAEGALLRASVEKLGLSARSYHRVLKVARTLADLGGQQSIGTGHIA
EALAYRNLDRKSIQPA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=793917 PVT68_RS10250 WP_280317729.1 2458090..2459580(+) (comM) [Microbulbifer bruguierae strain H12]
ATGAGTCTCTCGATTACCTACGCCCGCGCACAGCTGGGCATCGATGCACCGCTGGTTACGGTGGAAACCCACCTCGCCAA
CGGACTACCCGCATTCAATATTGTCGGCTTGCCGGAAGCCGCCGTGCGGGAAAGCCGTGACCGAGTGCGCAGCGCCATCG
TCAACAGTCATTTTGAATTCCCCCAACGCCGGATCACGGTCAACCTGGCGCCGGCGGATCTGCCCAAGGCCGGAGGTCGC
TACGACCTCGCCATCGCCCTGGGTATTCTGGCCGCCTCCGGGCAGGTGCCGGGGGAAGCGCTGGAACACTACGAATTTAT
CGGCGAACTGGCGTTATCCGGCAGCCTGCGCCCGATACCCGGCGCCCTGCCCGCGGCCATGGCGTGTCGCAACAGTAGCC
GTATTCTGGTTACCGCCCGTGAATCCGCCAGCGAAGCCGCGTTGATCAATACACCGGTCAAAGTGGCCTCGTCACTATTG
CAGGTATGCGCGCAGCTGCACGGGCGCGAAGCGCTGCCGGACGCGCAGCAGGATACCGAACAGGCGCCCGTGGTGTGCGC
GGATCTCGCCGATGTACGCGGGCAACTGAAAGCCAGACGGGCGCTGGAAGTCGCCGCGGCGGGCGGCCACAACCTGCTGT
TCTATGGCCCACCCGGCACGGGCAAGACCATGCTCGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTTACCGAGGGCGAA
CTGATCGAAGTGGCCGCGCTCTATTCCAGTGCGGGCCTCAGCCGTATCCGCCAGCGCCCATTTCGCGCACCGCACCACTC
CGCCTCGCCCACCGCGCTGGTAGGCGGCGGCAGCGATCCGCGCCCGGGAGAAATCAGTCTCGCGCACCGCGGCGTGCTGT
TTCTCGACGAGATGCCGGAGTTCCCGCGCTCCGCACTGGAGATTTTGCGCGAGCCACTGGAAAACGGCGAGGTGCGCATC
TCCCGTGCCCGCGCCCAGGTGACCTTCCCCGCCGACTTCCAGCTGGTCGCGGCGATGAACCCCTGCCCCTGCGGTTATCT
CGGCGAACCCCGCTGCCGCTGTACCCCAGACCGTATCGATCGCTACCGCAACAAACTTTCCGGCCCACTGCTGGACCGTA
TCGATATGCAGGTGGAGGTGGCGAGCATGAGCGCCAGCCAGCTGCAGCAGGCGGCGCCCGGTGAAGACTCCGATCGCGTG
CGGCAAAGAGTGCAGATTGCACGACAGTGCCAGCTGAACCGGCAGGGGAAGATCAACGCAGATCTGAAAGGCAGTGAACT
GGATGAACACTGTCGGCTGGGGAATGCTGAGGGCGCACTACTGCGCGCGTCGGTAGAAAAGCTCGGCCTGTCCGCACGCA
GTTATCACCGGGTATTGAAAGTGGCCCGCACACTCGCCGACCTGGGCGGCCAGCAGAGCATCGGCACCGGCCACATCGCC
GAGGCCCTTGCGTATCGCAATCTCGATCGCAAAAGTATCCAGCCGGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-137)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.382

100

0.55
  comM Haemophilus influenzae Rd KW20

53.094

100

0.536
  comM Vibrio campbellii strain DS40M4

53.521

100

0.536
  comM Glaesserella parasuis strain SC1401

52.695

100

0.532
  comM Legionella pneumophila str. Paris

50.299

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.299

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.462