Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PUN47_RS13535 Genome accession   NZ_CP118599
Coordinates   2890028..2890660 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain 10M-VF     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885028..2895660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS13510 (PUN47_13510) - 2885040..2886962 (+) 1923 WP_202651346.1 ABC transporter ATP-binding protein -
  PUN47_RS13515 (PUN47_13515) - 2886959..2887432 (+) 474 WP_222730787.1 TIGR02444 family protein -
  PUN47_RS13520 (PUN47_13520) - 2887544..2888521 (+) 978 WP_140229714.1 hydrolase -
  PUN47_RS13525 (PUN47_13525) - 2888613..2888822 (+) 210 WP_020329461.1 YheU family protein -
  PUN47_RS13530 (PUN47_13530) - 2888917..2889786 (+) 870 WP_004728583.1 phosphoribulokinase -
  PUN47_RS13535 (PUN47_13535) crp 2890028..2890660 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  PUN47_RS13540 (PUN47_13540) - 2890781..2891575 (-) 795 WP_274888686.1 DUF1338 domain-containing protein -
  PUN47_RS13545 (PUN47_13545) astD 2891761..2893218 (-) 1458 WP_274888687.1 succinylglutamate-semialdehyde dehydrogenase -
  PUN47_RS13550 (PUN47_13550) astA 2893252..2894271 (-) 1020 WP_032082358.1 arginine N-succinyltransferase -
  PUN47_RS13555 (PUN47_13555) - 2894371..2895582 (-) 1212 WP_020329456.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=793858 PUN47_RS13535 WP_004728582.1 2890028..2890660(+) (crp) [Vibrio fluvialis strain 10M-VF]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=793858 PUN47_RS13535 WP_004728582.1 2890028..2890660(+) (crp) [Vibrio fluvialis strain 10M-VF]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAATCTGGCGAAACAACCAGACGCTATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467