Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUN47_RS01515 Genome accession   NZ_CP118599
Coordinates   318215..318745 (+) Length   176 a.a.
NCBI ID   WP_202652298.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 313215..323745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS01500 (PUN47_01500) uvrA 313324..316146 (-) 2823 WP_202652296.1 excinuclease ABC subunit UvrA -
  PUN47_RS01505 (PUN47_01505) galU 316284..317153 (-) 870 WP_202643758.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUN47_RS01510 (PUN47_01510) qstR 317281..317931 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUN47_RS01515 (PUN47_01515) ssb 318215..318745 (+) 531 WP_202652298.1 single-stranded DNA-binding protein Machinery gene
  PUN47_RS01520 (PUN47_01520) csrD 318881..320875 (+) 1995 WP_172560259.1 RNase E specificity factor CsrD -
  PUN47_RS01525 (PUN47_01525) - 320883..322331 (+) 1449 WP_202652303.1 MSHA biogenesis protein MshI -
  PUN47_RS01530 (PUN47_01530) - 322328..322978 (+) 651 WP_044364104.1 MSHA biogenesis protein MshJ -
  PUN47_RS01535 (PUN47_01535) - 323004..323282 (+) 279 WP_172560579.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19554.74 Da        Isoelectric Point: 5.7626

>NTDB_id=793832 PUN47_RS01515 WP_202652298.1 318215..318745(+) (ssb) [Vibrio fluvialis strain 10M-VF]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPVQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=793832 PUN47_RS01515 WP_202652298.1 318215..318745(+) (ssb) [Vibrio fluvialis strain 10M-VF]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTACAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGTTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

88.827

100

0.903
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.477