Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PUN47_RS01510 Genome accession   NZ_CP118599
Coordinates   317281..317931 (-) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312281..322931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS01500 (PUN47_01500) uvrA 313324..316146 (-) 2823 WP_202652296.1 excinuclease ABC subunit UvrA -
  PUN47_RS01505 (PUN47_01505) galU 316284..317153 (-) 870 WP_202643758.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUN47_RS01510 (PUN47_01510) qstR 317281..317931 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUN47_RS01515 (PUN47_01515) ssb 318215..318745 (+) 531 WP_202652298.1 single-stranded DNA-binding protein Machinery gene
  PUN47_RS01520 (PUN47_01520) csrD 318881..320875 (+) 1995 WP_172560259.1 RNase E specificity factor CsrD -
  PUN47_RS01525 (PUN47_01525) - 320883..322331 (+) 1449 WP_202652303.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=793831 PUN47_RS01510 WP_024374534.1 317281..317931(-) (qstR) [Vibrio fluvialis strain 10M-VF]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=793831 PUN47_RS01510 WP_024374534.1 317281..317931(-) (qstR) [Vibrio fluvialis strain 10M-VF]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACTATCGAACTTACTACAAGGGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTGTTTATCAGCGAATTTACCGT
CAAATCTCACCTCTACCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACTCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528