Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HHSLTHF2_RS17940 Genome accession   NZ_AP022843
Coordinates   3931335..3932843 (+) Length   502 a.a.
NCBI ID   WP_125752904.1    Uniprot ID   A0AAP9ZEB3
Organism   Halomonas hydrothermalis strain Slthf2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3926335..3937843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHSLTHF2_RS17925 (HHSLTHF2_35730) - 3926856..3927824 (+) 969 WP_232060297.1 helix-turn-helix transcriptional regulator -
  HHSLTHF2_RS17930 (HHSLTHF2_35740) - 3928011..3930161 (+) 2151 WP_172422352.1 TonB-dependent siderophore receptor -
  HHSLTHF2_RS17935 (HHSLTHF2_35750) - 3930344..3931249 (+) 906 WP_172422353.1 ABC transporter substrate-binding protein -
  HHSLTHF2_RS17940 (HHSLTHF2_35760) comM 3931335..3932843 (+) 1509 WP_125752904.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HHSLTHF2_RS17945 (HHSLTHF2_35770) - 3932840..3933418 (-) 579 WP_172422354.1 NADPH-dependent FMN reductase -
  HHSLTHF2_RS17950 (HHSLTHF2_35780) - 3933892..3934991 (+) 1100 Protein_3538 esterase-like activity of phytase family protein -
  HHSLTHF2_RS17955 (HHSLTHF2_35800) - 3935313..3936227 (+) 915 WP_035556048.1 cation diffusion facilitator family transporter -
  HHSLTHF2_RS17960 (HHSLTHF2_35810) - 3936341..3937018 (+) 678 WP_035556050.1 thioredoxin domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53500.70 Da        Isoelectric Point: 7.6938

>NTDB_id=79379 HHSLTHF2_RS17940 WP_125752904.1 3931335..3932843(+) (comM) [Halomonas hydrothermalis strain Slthf2]
MTLAIVATRAGVGLEAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALINAGFDFPNTKRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVDALEGMECAGELALDGKLRAVPGVLPFALATRRVNKALIIPRACADEAALAGDLPVLPADT
LWQVVAHLLGQEKIPPHQLSASVRSTAPIADLADVRGQQQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLPGILPPLC
EDDALQVAAVRSVCGLPLEADWGQRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRNVLEVLRQPLE
TGEIHLSRASHERRYPAQFQLVAAMNPCPCGHLGDPRQRCQCSSSQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGEPSSAVRERVMAARERQMARGALNSQLSGKALEAACALNDEERAWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PTQPHFIEAIGYRQLDRLLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=79379 HHSLTHF2_RS17940 WP_125752904.1 3931335..3932843(+) (comM) [Halomonas hydrothermalis strain Slthf2]
ATGACACTAGCCATTGTGGCCACGCGCGCAGGGGTTGGACTGGAAGCCCCCGCCGTGCATGTCGAGGTACATCTAGCCAA
CGGCCTGCCGGGGCTAACGCTGGTGGGGCTGCCGGAAACCGCCGTCAAAGAGAGCCGCGAGCGGGTGCGCAGCGCGCTCA
TCAATGCGGGGTTTGATTTTCCCAATACCAAGCGCATTACCCTCAACCTTGCCCCTGCCGACCTACCCAAAGAGGGCGGC
CGCTTTGATTTACCGATTGCGCTCGGCATTCTGGCCGCTTCTGGCCAGATTCCAGTCGATGCGCTAGAAGGCATGGAGTG
CGCAGGCGAACTGGCGTTGGATGGCAAACTACGCGCCGTCCCCGGCGTATTGCCCTTTGCTCTCGCCACACGGCGCGTCA
ACAAAGCACTGATTATTCCCCGCGCCTGTGCCGACGAAGCCGCGTTAGCGGGCGACTTACCGGTTTTACCTGCCGACACC
CTATGGCAGGTCGTTGCTCACTTGCTGGGACAAGAGAAAATACCGCCCCACCAACTGTCTGCCTCGGTGAGATCCACGGC
TCCCATTGCCGACTTAGCCGACGTTCGCGGCCAGCAACAGGCACGCCGCGCACTAGAAGTGGCGGCCGCTGGTGGCCATA
ACTTGCTGCTAGCAGGGCCTCCTGGCACCGGAAAAACCATGCTCGCTAGCCGCTTACCGGGCATTTTGCCGCCGCTTTGC
GAAGACGATGCGCTGCAAGTGGCCGCTGTACGTTCAGTCTGTGGGCTACCGCTTGAAGCAGACTGGGGCCAGCGCCCTTT
TCGCCAGCCCCACCACAGCGCCAGCGCCGCCGCGTTAGTGGGGGGAGGCTCAAAGCCCAAACCTGGGGAAATCTCGCTTG
CTCACCACGGTGTTCTATTTTTAGACGAGCTGCCGGAGTTTTCGCGCAACGTCTTAGAAGTGTTAAGGCAGCCACTGGAA
ACGGGGGAAATTCACCTCTCACGCGCCAGCCATGAACGCCGTTATCCAGCGCAGTTTCAACTCGTTGCCGCCATGAACCC
CTGCCCCTGTGGCCACTTGGGCGATCCGCGTCAGCGCTGCCAGTGCAGTTCCAGTCAGATTCAGCGCTATCAGGCACGGC
TTTCTGGCCCGCTGCTAGACCGCATTGACCTGCAAGTGGAAGTGCCTGCTCTGCCGCCCGAACAGCTCACTGCCCAAACC
CAAGGCGAACCTTCCAGCGCCGTGCGCGAGCGGGTGATGGCCGCCCGAGAGCGCCAGATGGCGCGAGGCGCACTCAACAG
CCAGCTAAGCGGCAAAGCCTTAGAAGCCGCCTGCGCGCTGAACGATGAAGAGCGCGCCTGGTTGGCAGGCGTGCTGGAAA
AGCTCAAGCTCTCTGCCCGCGCTTACCACCGCGTCCTGCGGGTCGCACTTACCCTGGCCGATCTACAAGGCGAACCCAAG
CCTACCCAGCCGCACTTTATCGAGGCGATCGGCTACCGGCAGTTGGATAGGCTGTTGAAAGGTGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.607

100

0.572
  comM Vibrio cholerae strain A1552

55.666

100

0.558
  comM Glaesserella parasuis strain SC1401

55.03

100

0.556
  comM Vibrio campbellii strain DS40M4

54.871

100

0.55
  comM Legionella pneumophila str. Paris

51.896

99.801

0.518
  comM Legionella pneumophila strain ERS1305867

51.896

99.801

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.284

99.004

0.468

Multiple sequence alignment