Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWW24_RS17555 Genome accession   NZ_CP118590
Coordinates   3672993..3673532 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3667993..3678532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS17535 - 3668303..3668632 (-) 330 WP_009698822.1 hypothetical protein -
  PWW24_RS17540 gspM 3668625..3669275 (-) 651 WP_005444327.1 type II secretion system protein GspM -
  PWW24_RS17545 - 3669272..3670720 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW24_RS17550 csrD 3670732..3672741 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW24_RS17555 ssb 3672993..3673532 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW24_RS17560 qstR 3673827..3674471 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW24_RS17565 galU 3674633..3675505 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW24_RS17570 uvrA 3675643..3678465 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=793769 PWW24_RS17555 WP_005444320.1 3672993..3673532(-) (ssb) [Vibrio harveyi strain fish12]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=793769 PWW24_RS17555 WP_005444320.1 3672993..3673532(-) (ssb) [Vibrio harveyi strain fish12]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464