Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PWW24_RS17560 Genome accession   NZ_CP118590
Coordinates   3673827..3674471 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain fish12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3668827..3679471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS17545 - 3669272..3670720 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW24_RS17550 csrD 3670732..3672741 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW24_RS17555 ssb 3672993..3673532 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW24_RS17560 qstR 3673827..3674471 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW24_RS17565 galU 3674633..3675505 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW24_RS17570 uvrA 3675643..3678465 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=793770 PWW24_RS17560 WP_009698824.1 3673827..3674471(+) (qstR) [Vibrio harveyi strain fish12]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=793770 PWW24_RS17560 WP_009698824.1 3673827..3674471(+) (qstR) [Vibrio harveyi strain fish12]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523