Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWW23_RS16945 Genome accession   NZ_CP118586
Coordinates   3591459..3591998 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3586459..3596998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW23_RS16925 - 3586769..3587098 (-) 330 WP_009698822.1 hypothetical protein -
  PWW23_RS16930 gspM 3587091..3587741 (-) 651 WP_005444327.1 type II secretion system protein GspM -
  PWW23_RS16935 - 3587738..3589186 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW23_RS16940 csrD 3589198..3591207 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW23_RS16945 ssb 3591459..3591998 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW23_RS16950 qstR 3592293..3592937 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW23_RS16955 galU 3593099..3593971 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW23_RS16960 uvrA 3594109..3596931 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=793724 PWW23_RS16945 WP_005444320.1 3591459..3591998(-) (ssb) [Vibrio harveyi strain fish6]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=793724 PWW23_RS16945 WP_005444320.1 3591459..3591998(-) (ssb) [Vibrio harveyi strain fish6]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464