Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWW25_RS12380 Genome accession   NZ_CP118584
Coordinates   2640982..2641521 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2635982..2646521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS12360 - 2636292..2636621 (-) 330 WP_009698822.1 hypothetical protein -
  PWW25_RS12365 gspM 2636614..2637264 (-) 651 WP_274876470.1 type II secretion system protein GspM -
  PWW25_RS12370 - 2637261..2638709 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW25_RS12375 csrD 2638721..2640730 (-) 2010 WP_274876471.1 RNase E specificity factor CsrD -
  PWW25_RS12380 ssb 2640982..2641521 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW25_RS12385 qstR 2641816..2642460 (+) 645 WP_050906941.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW25_RS12390 galU 2642622..2643494 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW25_RS12395 uvrA 2643632..2646454 (+) 2823 WP_069687506.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=793665 PWW25_RS12380 WP_005444320.1 2640982..2641521(-) (ssb) [Vibrio harveyi strain fish5]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=793665 PWW25_RS12380 WP_005444320.1 2640982..2641521(-) (ssb) [Vibrio harveyi strain fish5]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464