Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   Q7572_RS01040 Genome accession   NZ_CP131878
Coordinates   232472..235306 (-) Length   944 a.a.
NCBI ID   WP_009505321.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 227472..240306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01030 (Q7572_01035) omp33-36 228837..229739 (-) 903 WP_002054064.1 porin Omp33-36 -
  Q7572_RS01035 (Q7572_01040) - 230732..232438 (+) 1707 WP_342049695.1 GGDEF domain-containing protein -
  Q7572_RS01040 (Q7572_01045) uvrA 232472..235306 (-) 2835 WP_009505321.1 excinuclease ABC subunit UvrA Machinery gene
  Q7572_RS01045 (Q7572_01050) - 235601..236203 (+) 603 WP_004884872.1 TetR/AcrR family transcriptional regulator -
  Q7572_RS01050 (Q7572_01055) - 236207..237184 (+) 978 WP_009505304.1 zinc-binding dehydrogenase -
  Q7572_RS01055 (Q7572_01060) - 237251..237604 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  Q7572_RS01060 (Q7572_01065) - 237657..237998 (+) 342 WP_004884869.1 GlpM family protein -
  Q7572_RS01065 (Q7572_01070) - 238042..238848 (-) 807 WP_004884868.1 SDR family oxidoreductase -
  Q7572_RS01070 (Q7572_01075) - 238952..239323 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  Q7572_RS01075 (Q7572_01080) tenA 239388..240062 (-) 675 WP_004884867.1 thiaminase II -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104473.62 Da        Isoelectric Point: 6.4549

>NTDB_id=793666 Q7572_RS01040 WP_009505321.1 232472..235306(-) (uvrA) [Acinetobacter nosocomialis strain 2014S01-097]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKTLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSSEKLIPNPDLAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQDLNLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYEELAKHADSLTGQYLSGKLKIEVPKKRTQSPRPDEFIKLSGASGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLASTQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGQIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=793666 Q7572_RS01040 WP_009505321.1 232472..235306(-) (uvrA) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGTACCCATAACTTAAAAAATGTGTCTCTCGATATTCCACGCGACAA
ATTTGTGGTGATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTACGCTGAAGGACAACGCC
GTTACGTCGAATCACTTTCGGCCTATGCTCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAGGGT
TTATCACCAGCGATTGCAATTGAGCAAAAATCTACCAGTCACAACCCACGCTCAACCGTCGGTACCATTACCGAAATTTA
TGACTATTTACGTTTGCTTTATGCCCGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCACAAACCG
TTTCTGAAATGGTCGATGCAGTAAAAACGCTTGAGGAAGGTACAGCACTTATGTTGCTTGCCCCAGTGGTACGTGAGCGT
AAAGGTGAGTACAGCAACCTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCCCGTGTAGATGGCGAAATTATTGA
TATTGATACGCCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTCAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAGACCGCACTGCGTTTAGGTGGTGATATTGCTGTTTTATCGTGGATGAAT
GGCGAACACCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAGTGTGATCGCGCAGTTGCTGAACTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTCGGTGCCTGCCCTGTTTGTGATGGCTTAGGTACACGTAGCCATTTTAGTTCTGAGA
AACTGATTCCAAATCCTGATCTTGCGATTAGCGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCACTTCGGTTTTCAACTTGATACGCCTTGGAACCAGTTAGATAAAGACACGCAAAAGAA
ATTTCTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAGCGCGGCCGCAAACATACACGCGTACAAC
CTTTTGAAGGAATTTTGCCACACCTTGAGCGTCGCTACCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCTCAA
TATTTATCTAATGCAGCATGTGATGCATGTGGTGGTTCACGTCTAAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCAGACATTACCCGCATGTCGATTGGCGATGCAGAAAGCTATTATCAAGATTTAAATCTTGAAGGTGCTAAAG
GCGAAATTGCCGATAAAATCTTTAAAGAGATTCGTGAGCGTCTGCACTTCTTGGTGAGTGTTGGTCTGAACTATTTAAGT
CTGGCTCGTTCTGCCGAAACACTATCGGGTGGTGAAGCTCAGCGTATCCGTTTAGCCTCGCAAATTGGTGCAGGTTTAAT
GGGTGTCATGTATGTTCTAGATGAACCATCAATTGGTCTCCATCAACGCGATAATGATCGTTTATTACAAACTCTGATTC
GCTTACGTGATTTAGGTAACACGGTATTAGTCGTTGAACACGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCGGGTGCTGGGGTACATGGTGGCGTTGTCATTGCTGAAGGAACTTATGAGGAGCTGGCTAAACATGCCGACTC
TCTTACAGGTCAATACCTTTCAGGCAAGCTTAAAATTGAGGTGCCAAAAAAACGTACTCAATCGCCACGTCCAGATGAAT
TCATCAAGCTTTCAGGTGCATCAGGCCATAACTTAAAAAATGTCGATTTGACTATTCCACTTGGCATTATGACTTGTGTG
ACTGGGGTTTCAGGTTCGGGTAAATCAACACTGATTAACCGTACGTTACTTCCACTGGCTTCAACACAGCTTAATGGTGC
AACAACCTTAACAGCTGAAAAGTTCGACTCGATTGATGGTCTACAACACCTTGATAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCACGTTCTAACCCTGCAACGTACACAGGGCTATTTACACCAATTCGTGAGTTATTTGCTCAAACG
CCAGAAGCGAAAGCCCGTGGTTATAGCGCTGGTCGTTTCTCGTTTAACGTGAAAGGCGGACGCTGTGAAGCCTGTGAAGG
CGACGGCATGATTAAAGTCGCGATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGTAAGCGCTATA
ACCGTGAAACACTTGAAGTCGGTTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCAGTTATTCACCGTCGTTTAGAAACCTTAACTCAGGTGGGCTTAGGCTATATTCGTTTAGGTCA
GGCTGCTACTACTTTATCTGGTGGTGAAGCACAGCGTGTAAAACTGGCACGTGAGTTAGCGAAACGAGATACAGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTCTGCACTTCCACGATATTGCTAAGTTACTCGACATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATAGTGGTGATTGAACATAACCTTGACGTTATTAAAACAGCGGACTGGGTTGTGGACTTAGG
CCCTGAAGGTGGCTCAGGTGGTGGGCAAATTATTGCTGAAGGTACACCTGAACAAGTCGCTGAGGTCGAGATTTCCCATA
CGGGTCGTTTCTTGAAACCGATGTTGAAACAATAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-399)

UvrA interaction domain (UvrA_inter)

(132-237)

ABC transporter (ABC_tran)

(625-862)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.356

100

0.564
  uvrA Streptococcus pneumoniae TIGR4

56.356

100

0.564
  uvrA Streptococcus pneumoniae D39

56.356

100

0.564