Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PWW25_RS12385 Genome accession   NZ_CP118584
Coordinates   2641816..2642460 (+) Length   214 a.a.
NCBI ID   WP_050906941.1    Uniprot ID   A0A8B3DJF2
Organism   Vibrio harveyi strain fish5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636816..2647460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS12370 - 2637261..2638709 (-) 1449 WP_110416082.1 MSHA biogenesis protein MshI -
  PWW25_RS12375 csrD 2638721..2640730 (-) 2010 WP_274876471.1 RNase E specificity factor CsrD -
  PWW25_RS12380 ssb 2640982..2641521 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW25_RS12385 qstR 2641816..2642460 (+) 645 WP_050906941.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW25_RS12390 galU 2642622..2643494 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW25_RS12395 uvrA 2643632..2646454 (+) 2823 WP_069687506.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24561.40 Da        Isoelectric Point: 8.7703

>NTDB_id=793666 PWW25_RS12385 WP_050906941.1 2641816..2642460(+) (qstR) [Vibrio harveyi strain fish5]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKALVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=793666 PWW25_RS12385 WP_050906941.1 2641816..2642460(+) (qstR) [Vibrio harveyi strain fish5]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAGCACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGCCAAAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B3DJF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523