Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PWW27_RS13985 Genome accession   NZ_CP118576
Coordinates   2970302..2971825 (+) Length   507 a.a.
NCBI ID   WP_274885812.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2965302..2976825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS13970 ilvE 2966946..2967884 (-) 939 WP_005451015.1 branched-chain-amino-acid transaminase -
  PWW27_RS13975 ilvM 2967897..2968181 (-) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  PWW27_RS13980 ilvG 2968193..2969839 (-) 1647 WP_009699088.1 acetolactate synthase 2 catalytic subunit -
  PWW27_RS13985 comM 2970302..2971825 (+) 1524 WP_274885812.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PWW27_RS13990 - 2971828..2972661 (-) 834 WP_005451004.1 GGDEF domain-containing protein -
  PWW27_RS13995 - 2972811..2973767 (-) 957 WP_274885813.1 DUF2860 domain-containing protein -
  PWW27_RS14000 - 2973932..2974810 (+) 879 WP_017818137.1 acyltransferase -
  PWW27_RS14005 - 2974851..2975453 (-) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  PWW27_RS14010 - 2975488..2976474 (-) 987 WP_005450998.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55007.05 Da        Isoelectric Point: 9.2602

>NTDB_id=793492 PWW27_RS13985 WP_274885812.1 2970302..2971825(+) (comM) [Vibrio harveyi strain fish1]
MGLAIIHSRASVGVQAPLVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLIGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAAVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=793492 PWW27_RS13985 WP_274885812.1 2970302..2971825(+) (comM) [Vibrio harveyi strain fish1]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTTGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAATTTTCAGTTTCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCTGCGAATAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCAGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGCCCTCCTGGTACAGGTAAAACCATGTTAGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAAACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CCCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCGCAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGATTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGGAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGACATGTCGCTGGAAATTCCTGCTTTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGGCGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCTGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

97.83

100

0.978
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.922

100

0.442