Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HRS36_RS15135 Genome accession   NZ_AP022839
Coordinates   3207310..3208821 (+) Length   503 a.a.
NCBI ID   WP_173238554.1    Uniprot ID   A0A6F8T7N3
Organism   Legionella antarctica strain TUM19329     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202310..3213821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS15100 (TUM19329_30480) - 3203167..3203550 (-) 384 WP_226905657.1 DUF1499 domain-containing protein -
  HRS36_RS15105 (TUM19329_30490) - 3203831..3204514 (+) 684 WP_173238552.1 VTT domain-containing protein -
  HRS36_RS15110 (TUM19329_30500) - 3204527..3205336 (-) 810 WP_173238553.1 aminotransferase class IV -
  HRS36_RS15115 (TUM19329_30510) - 3205348..3205533 (-) 186 WP_173237935.1 PA3496 family putative envelope integrity protein -
  HRS36_RS15120 (TUM19329_30520) - 3205772..3206362 (+) 591 WP_173237936.1 5-formyltetrahydrofolate cyclo-ligase -
  HRS36_RS15125 (TUM19329_30530) - 3206422..3206760 (-) 339 WP_173237937.1 P-II family nitrogen regulator -
  HRS36_RS15130 (TUM19329_30540) ubiK 3206889..3207143 (+) 255 WP_173237938.1 ubiquinone biosynthesis accessory factor UbiK -
  HRS36_RS15135 (TUM19329_30550) comM 3207310..3208821 (+) 1512 WP_173238554.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HRS36_RS15140 (TUM19329_30560) - 3209128..3209511 (+) 384 WP_173237939.1 hypothetical protein -
  HRS36_RS15145 (TUM19329_30570) - 3209570..3210463 (-) 894 WP_173237940.1 aspartate carbamoyltransferase catalytic subunit -
  HRS36_RS15150 (TUM19329_30580) ruvX 3210588..3211007 (-) 420 WP_173237941.1 Holliday junction resolvase RuvX -
  HRS36_RS15155 (TUM19329_30590) - 3211000..3211563 (-) 564 WP_173237942.1 YqgE/AlgH family protein -
  HRS36_RS15160 (TUM19329_30600) - 3211744..3212505 (-) 762 WP_420814307.1 type II/III secretion system protein -
  HRS36_RS15165 (TUM19329_30610) - 3212656..3213327 (+) 672 WP_226905495.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54688.92 Da        Isoelectric Point: 8.5001

>NTDB_id=79312 HRS36_RS15135 WP_173238554.1 3207310..3208821(+) (comM) [Legionella antarctica strain TUM19329]
MNLAFTKTRSTVGIMAQSVSVEVHLSNGLPGFTMVGLAETAVKESKDRVRSAIINSQFEFPCRRITVNLGPADLPKTGSG
FDLPIALGILAASDQIPQKSLIGHEFIGELALSGELRAVSAIIPVVLAAHRDKQLLIIANANANEASLAGYQGVYTANNL
REVCAYLSQATPLNNLPPRPEINTTHHELDWSDIKGQFHAKNAMEIAACGGHSILLSGAPGSGKTMLARRFSTLLPELSE
TQALECAAINSIRGKSPDFTEWRLPPFRAPHHTASPMSLVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQTEFPAKFQLLAAMNPCPCGQWGNPQANCLCTPDRISRYLTKLSAPLLDRIDMHITVQALSQQELVKPN
TNPEKQSMLIRDKVITTRNIQLKRQNCINANLSAKSCELVCELGSAEQNFLSQALNKLKLSARGYHRLLKVARTIADMNN
SQVVSLNHLQQALSFKQALQSPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=79312 HRS36_RS15135 WP_173238554.1 3207310..3208821(+) (comM) [Legionella antarctica strain TUM19329]
ATGAATCTTGCATTTACCAAAACACGGAGCACCGTAGGTATCATGGCACAATCAGTGTCTGTAGAAGTCCATTTATCCAA
TGGTTTACCAGGTTTTACTATGGTGGGTCTTGCTGAAACCGCAGTTAAAGAAAGCAAGGATAGAGTTCGTAGCGCCATCA
TTAACAGCCAATTCGAATTTCCCTGCCGCAGAATTACCGTTAATCTGGGTCCGGCTGATTTGCCCAAAACAGGTAGTGGT
TTTGACCTGCCAATAGCATTGGGAATCCTTGCTGCATCAGATCAAATACCCCAAAAAAGTCTGATAGGTCACGAATTTAT
TGGCGAATTAGCCTTGAGTGGTGAACTGAGAGCCGTTTCAGCCATAATCCCTGTCGTCTTGGCAGCCCATAGAGACAAGC
AGTTGTTAATCATTGCAAACGCCAACGCAAATGAAGCCTCTTTAGCAGGATATCAAGGAGTTTATACGGCTAATAACCTA
CGAGAAGTCTGTGCTTATCTTAGCCAGGCAACACCCTTGAATAATTTGCCTCCAAGACCTGAAATAAATACGACTCATCA
TGAGTTGGATTGGTCTGATATCAAAGGGCAATTTCATGCCAAAAATGCGATGGAGATTGCTGCCTGCGGAGGACATAGCA
TTTTATTAAGTGGTGCTCCAGGCAGTGGAAAAACAATGCTGGCCCGACGTTTTAGTACTTTGTTGCCAGAGCTATCAGAA
ACTCAAGCACTCGAATGTGCTGCCATTAATTCAATACGCGGTAAATCACCTGATTTTACCGAATGGCGATTACCACCTTT
TCGCGCCCCCCATCATACTGCGTCACCCATGTCTTTAGTTGGTGGTGGAAATCCGCCCAAACCCGGCGAAATATCGCTAG
CACATCATGGCGTATTATTTCTGGATGAATTACCAGAATTTAACAGACAAGTACTTGAAACACTTCGAGAACCATTAGAG
TCGGGACATATTTGCATTTCAAGAGCAGCAGCTCAAACGGAGTTTCCAGCAAAATTCCAATTATTGGCCGCCATGAACCC
TTGCCCTTGTGGGCAATGGGGAAATCCACAGGCCAATTGTTTATGTACTCCCGATCGCATCAGTCGTTACCTGACAAAAC
TTTCTGCCCCTTTATTAGATCGCATTGACATGCACATTACTGTCCAGGCTTTATCCCAACAAGAATTAGTCAAACCCAAT
ACGAATCCTGAGAAGCAAAGTATGTTGATCCGGGATAAGGTAATAACCACACGAAACATCCAATTGAAGCGGCAAAATTG
CATCAATGCCAATTTAAGTGCCAAATCCTGTGAGCTTGTTTGTGAATTAGGCTCAGCGGAACAAAATTTTTTAAGTCAGG
CATTGAATAAACTAAAACTATCAGCAAGGGGTTACCACCGTTTATTGAAAGTAGCCAGAACTATAGCTGATATGAATAAC
AGTCAAGTAGTGAGCCTTAATCATTTACAACAGGCATTATCTTTTAAACAAGCCTTGCAATCACCAAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8T7N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

81.909

100

0.819
  comM Legionella pneumophila strain ERS1305867

81.909

100

0.819
  comM Haemophilus influenzae Rd KW20

51.6

99.404

0.513
  comM Vibrio cholerae strain A1552

51.008

98.608

0.503
  comM Vibrio campbellii strain DS40M4

50.602

99.006

0.501
  comM Glaesserella parasuis strain SC1401

48.016

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.734

98.608

0.412

Multiple sequence alignment