Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QMM33_RS08560 Genome accession   NZ_AP025940
Coordinates   1707960..1708670 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702960..1713670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS08545 (PC0204_16830) - 1703502..1703750 (-) 249 WP_000364990.1 YneF family protein -
  QMM33_RS08550 (PC0204_16840) treC 1704006..1705631 (-) 1626 WP_000171223.1 alpha,alpha-phosphotrehalase -
  QMM33_RS08555 (PC0204_16860) treP 1705809..1707775 (-) 1967 Protein_1699 PTS system trehalose-specific EIIBC component -
  QMM33_RS08560 (PC0204_16870) treR 1707960..1708670 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  QMM33_RS08565 - 1708825..1710074 (+) 1250 Protein_1701 ISL3 family transposase -
  QMM33_RS08570 (PC0204_16900) - 1710149..1711075 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  QMM33_RS08575 (PC0204_16910) amiE 1711086..1712153 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  QMM33_RS08580 (PC0204_16920) amiD 1712162..1713088 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=79312 QMM33_RS08560 WP_000760673.1 1707960..1708670(+) (treR) [Streptococcus pneumoniae strain PZ900700204]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=79312 QMM33_RS08560 WP_000760673.1 1707960..1708670(+) (treR) [Streptococcus pneumoniae strain PZ900700204]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment