Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HRS36_RS05395 Genome accession   NZ_AP022839
Coordinates   1119126..1119236 (+) Length   36 a.a.
NCBI ID   WP_267313959.1    Uniprot ID   -
Organism   Legionella antarctica strain TUM19329     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114126..1124236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS05380 (TUM19329_10660) - 1114497..1116002 (-) 1506 WP_226905582.1 proton-conducting transporter membrane subunit -
  HRS36_RS05385 (TUM19329_10670) - 1116194..1117180 (-) 987 WP_173236517.1 fused DSP-PTPase phosphatase/NAD kinase-like protein -
  HRS36_RS05390 (TUM19329_10680) - 1117401..1118873 (+) 1473 WP_173236518.1 SEL1-like repeat protein -
  HRS36_RS05395 pilR 1119126..1119236 (+) 111 WP_267313959.1 helix-turn-helix domain-containing protein Regulator
  HRS36_RS05400 (TUM19329_10690) - 1119400..1119645 (+) 246 WP_173236519.1 hypothetical protein -
  HRS36_RS05405 (TUM19329_10700) - 1119740..1120390 (-) 651 WP_226905583.1 RES family NAD+ phosphorylase -
  HRS36_RS05410 (TUM19329_10710) - 1120447..1120842 (-) 396 WP_173236521.1 MbcA/ParS/Xre antitoxin family protein -
  HRS36_RS05415 (TUM19329_10720) - 1120933..1122363 (-) 1431 WP_173236522.1 M48 family metalloprotease -
  HRS36_RS05420 (TUM19329_10730) ribD 1122426..1123478 (+) 1053 WP_173236523.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  HRS36_RS05425 (TUM19329_10740) - 1123478..1124092 (+) 615 WP_173238466.1 riboflavin synthase -

Sequence

Protein


Download         Length: 36 a.a.        Molecular weight: 4204.05 Da        Isoelectric Point: 12.3639

>NTDB_id=79292 HRS36_RS05395 WP_267313959.1 1119126..1119236(+) (pilR) [Legionella antarctica strain TUM19329]
MLNALNKTKWNRTAAARLLGISFRTLRYRLKKLGLD

Nucleotide


Download         Length: 111 bp        

>NTDB_id=79292 HRS36_RS05395 WP_267313959.1 1119126..1119236(+) (pilR) [Legionella antarctica strain TUM19329]
ATCCTCAATGCGCTCAATAAAACAAAATGGAATAGAACAGCTGCCGCTCGACTATTAGGCATTAGCTTCAGGACCTTACG
GTACAGATTAAAAAAATTAGGTCTGGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(2-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.222

100

0.722
  pilR Pseudomonas aeruginosa PAK

63.889

100

0.639

Multiple sequence alignment