Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   HRS36_RS04295 Genome accession   NZ_AP022839
Coordinates   873809..874045 (-) Length   78 a.a.
NCBI ID   WP_173238450.1    Uniprot ID   -
Organism   Legionella antarctica strain TUM19329     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868809..879045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS04270 (TUM19329_08450) - 870421..870867 (+) 447 WP_173236366.1 Fur family transcriptional regulator -
  HRS36_RS04275 (TUM19329_08460) - 871303..872877 (+) 1575 WP_173236367.1 hypothetical protein -
  HRS36_RS04280 (TUM19329_08470) pilE 872975..873421 (-) 447 WP_173236368.1 type IV pilin protein Machinery gene
  HRS36_RS18930 - 873545..873682 (-) 138 WP_173238449.1 pilus assembly protein -
  HRS36_RS18935 - 873729..873854 (-) 126 Protein_848 PilW family protein -
  HRS36_RS04295 fimT 873809..874045 (-) 237 WP_173238450.1 GspH/FimT family pseudopilin Machinery gene
  HRS36_RS04300 (TUM19329_08480) - 874097..875353 (-) 1257 WP_173236369.1 DEAD/DEAH box helicase -
  HRS36_RS04305 (TUM19329_08490) - 875598..876458 (-) 861 WP_173236370.1 polysaccharide deacetylase family protein -
  HRS36_RS04310 (TUM19329_08500) - 876642..877988 (-) 1347 WP_173236371.1 type IV secretion protein Dot -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 8523.72 Da        Isoelectric Point: 6.7014

>NTDB_id=79291 HRS36_RS04295 WP_173238450.1 873809..874045(-) (fimT) [Legionella antarctica strain TUM19329]
MNMVVCPFGTQHSITCGTNWNSGWIIVTQPVANTGTLLKSQQATPVDPTLTANVTSVVFDSHGIRLFLLAKEQEDRVH

Nucleotide


Download         Length: 237 bp        

>NTDB_id=79291 HRS36_RS04295 WP_173238450.1 873809..874045(-) (fimT) [Legionella antarctica strain TUM19329]
ATGAACATGGTTGTATGTCCATTTGGGACTCAACATTCTATTACTTGCGGCACTAACTGGAACTCTGGATGGATAATAGT
AACTCAACCAGTGGCCAATACAGGTACTCTTCTAAAGAGCCAACAAGCAACTCCAGTAGACCCGACATTAACCGCTAATG
TAACAAGTGTAGTATTTGACTCCCATGGAATACGGCTTTTTTTGTTGGCCAAGGAACAGGAGGACAGAGTTCATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(4-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

59.375

82.051

0.487

Multiple sequence alignment