Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVT70_RS09535 Genome accession   NZ_CP118440
Coordinates   2054230..2054757 (+) Length   175 a.a.
NCBI ID   WP_042999045.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain DC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2054944..2055246 2054230..2054757 flank 187


Gene organization within MGE regions


Location: 2054230..2055246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT70_RS09535 (PVT70_09510) ssb 2054230..2054757 (+) 528 WP_042999045.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PVT70_RS09540 (PVT70_09515) tnpA 2054944..2055207 (+) 264 Protein_1842 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18877.92 Da        Isoelectric Point: 5.2456

>NTDB_id=792576 PVT70_RS09535 WP_042999045.1 2054230..2054757(+) (ssb) [Citrobacter amalonaticus strain DC]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=792576 PVT70_RS09535 WP_042999045.1 2054230..2054757(+) (ssb) [Citrobacter amalonaticus strain DC]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGTGAAATGAAAGAGCAGACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTAGAGAAATACACCACGGAAGTGGTGGTGAATGTTGG
TGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCACCGGCAGGCGGTCAGCAGCAACAGGGTGGTTGGGGTC
AACCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCCCCAGCAGCA
CCGTCTAATGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

46.995

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.377