Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PVT70_RS07810 Genome accession   NZ_CP118440
Coordinates   1672821..1674341 (-) Length   506 a.a.
NCBI ID   WP_061069423.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain DC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1667821..1679341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT70_RS07800 (PVT70_07775) hdfR 1671505..1672338 (-) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -
  PVT70_RS07805 (PVT70_07780) maoP 1672457..1672795 (+) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  PVT70_RS07810 (PVT70_07785) comM 1672821..1674341 (-) 1521 WP_061069423.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PVT70_RS07815 (PVT70_07790) ilvL 1674694..1674792 (+) 99 WP_001311244.1 ilv operon leader peptide -
  PVT70_RS07820 (PVT70_07795) ilvX 1674879..1674929 (+) 51 WP_193762813.1 peptide IlvX -
  PVT70_RS07825 (PVT70_07800) ilvG 1674932..1676578 (+) 1647 WP_044258256.1 acetolactate synthase 2 catalytic subunit -
  PVT70_RS07830 (PVT70_07805) ilvM 1676575..1676838 (+) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  PVT70_RS07835 (PVT70_07810) ilvE 1676857..1677786 (+) 930 WP_042998773.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55050.90 Da        Isoelectric Point: 7.3290

>NTDB_id=792573 PVT70_RS07810 WP_061069423.1 1672821..1674341(-) (comM) [Citrobacter amalonaticus strain DC]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGVLRGVPGAISSATEAIRVGRGIIVAKENENEVGLIEGEGCLVADHL
QAVCAFLEGKHDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKQRVIGARERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=792573 PVT70_RS07810 WP_061069423.1 1672821..1674341(-) (comM) [Citrobacter amalonaticus strain DC]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGTGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAAACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
TGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTGTTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACTAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGTACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACACCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACAGCGGGTCATTGGTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCACA
CCTGCAAAACAGGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCCTCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGTCTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Haemophilus influenzae Rd KW20

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.416

99.802

0.583
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429