Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVE41_RS07000 Genome accession   NZ_CP118438
Coordinates   1441799..1442338 (-) Length   179 a.a.
NCBI ID   WP_011079389.1    Uniprot ID   Q7MHB8
Organism   Vibrio vulnificus strain 1908-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1436799..1447338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS06980 (PVE41_06980) - 1437216..1437536 (-) 321 WP_011079393.1 MSHA biogenesis protein MshK -
  PVE41_RS06985 (PVE41_06985) gspM 1437529..1438179 (-) 651 WP_011079392.1 type II secretion system protein GspM -
  PVE41_RS06990 (PVE41_06990) - 1438176..1439636 (-) 1461 WP_011079391.1 hypothetical protein -
  PVE41_RS06995 (PVE41_06995) csrD 1439649..1441646 (-) 1998 WP_065090053.1 RNase E specificity factor CsrD -
  PVE41_RS07000 (PVE41_07000) ssb 1441799..1442338 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  PVE41_RS07005 (PVE41_07005) qstR 1442638..1443285 (+) 648 WP_011079388.1 response regulator transcription factor Regulator
  PVE41_RS07010 (PVE41_07010) galU 1443471..1444343 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PVE41_RS07015 (PVE41_07015) uvrA 1444485..1447307 (+) 2823 WP_043877332.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19794.97 Da        Isoelectric Point: 5.2358

>NTDB_id=792536 PVE41_RS07000 WP_011079389.1 1441799..1442338(-) (ssb) [Vibrio vulnificus strain 1908-10]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=792536 PVE41_RS07000 WP_011079389.1 1441799..1442338(-) (ssb) [Vibrio vulnificus strain 1908-10]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGTGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.553
  ssb Neisseria meningitidis MC58

46.237

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.48