Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PVE41_RS07005 Genome accession   NZ_CP118438
Coordinates   1442638..1443285 (+) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus strain 1908-10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437638..1448285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS06990 (PVE41_06990) - 1438176..1439636 (-) 1461 WP_011079391.1 hypothetical protein -
  PVE41_RS06995 (PVE41_06995) csrD 1439649..1441646 (-) 1998 WP_065090053.1 RNase E specificity factor CsrD -
  PVE41_RS07000 (PVE41_07000) ssb 1441799..1442338 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  PVE41_RS07005 (PVE41_07005) qstR 1442638..1443285 (+) 648 WP_011079388.1 response regulator transcription factor Regulator
  PVE41_RS07010 (PVE41_07010) galU 1443471..1444343 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PVE41_RS07015 (PVE41_07015) uvrA 1444485..1447307 (+) 2823 WP_043877332.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=792537 PVE41_RS07005 WP_011079388.1 1442638..1443285(+) (qstR) [Vibrio vulnificus strain 1908-10]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=792537 PVE41_RS07005 WP_011079388.1 1442638..1443285(+) (qstR) [Vibrio vulnificus strain 1908-10]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGTG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47