Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7611_RS04275 Genome accession   NZ_CP131723
Coordinates   833283..833789 (-) Length   168 a.a.
NCBI ID   WP_112122495.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 828283..838789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS04240 (Q7611_04240) raiA 828504..828827 (-) 324 WP_112071510.1 ribosome-associated translation inhibitor RaiA -
  Q7611_RS04245 (Q7611_04245) bamC 829017..829646 (-) 630 WP_112088134.1 outer membrane protein assembly factor BamC -
  Q7611_RS04250 (Q7611_04250) dapA 829757..830653 (-) 897 WP_342122407.1 4-hydroxy-tetrahydrodipicolinate synthase -
  Q7611_RS04255 (Q7611_04255) bcp 830754..831221 (+) 468 WP_342122410.1 thioredoxin-dependent thiol peroxidase -
  Q7611_RS04260 (Q7611_04260) exbB 831390..831842 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  Q7611_RS04265 (Q7611_04265) exbD 831846..832289 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  Q7611_RS04270 (Q7611_04270) - 832299..833105 (+) 807 WP_042603488.1 energy transducer TonB -
  Q7611_RS04275 (Q7611_04275) ssb 833283..833789 (-) 507 WP_112122495.1 single-stranded DNA-binding protein Machinery gene
  Q7611_RS04280 (Q7611_04280) uvrA 833943..836774 (+) 2832 WP_136429362.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18763.58 Da        Isoelectric Point: 5.2649

>NTDB_id=792508 Q7611_RS04275 WP_112122495.1 833283..833789(-) (ssb) [Haemophilus influenzae strain 2018C08-260]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGAPQPSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=792508 Q7611_RS04275 WP_112122495.1 833283..833789(-) (ssb) [Haemophilus influenzae strain 2018C08-260]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGG
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGCGGTGCGCCACAACCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAGCCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.932

100

0.589
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.369