Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q7616_RS03980 Genome accession   NZ_CP131717
Coordinates   769842..770849 (+) Length   335 a.a.
NCBI ID   WP_005649027.1    Uniprot ID   Q4QNM6
Organism   Haemophilus influenzae strain 2016N21-284     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764842..775849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS03955 (Q7616_03960) aspS 765524..767290 (+) 1767 WP_342120455.1 aspartate--tRNA ligase -
  Q7616_RS03960 (Q7616_03965) nudB 767312..767785 (+) 474 WP_342120459.1 dihydroneopterin triphosphate diphosphatase -
  Q7616_RS03965 (Q7616_03970) - 767798..768538 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7616_RS03970 (Q7616_03975) ruvC 768585..769157 (+) 573 WP_005659992.1 crossover junction endodeoxyribonuclease RuvC -
  Q7616_RS03975 (Q7616_03980) ruvA 769220..769834 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  Q7616_RS03980 (Q7616_03985) ruvB 769842..770849 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q7616_RS03985 (Q7616_03990) - 770901..771188 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  Q7616_RS03990 (Q7616_03995) xerD 771361..772254 (-) 894 WP_118806680.1 site-specific tyrosine recombinase XerD -
  Q7616_RS03995 (Q7616_04000) - 772285..773451 (-) 1167 WP_005654088.1 3-phenylpropionate MFS transporter -
  Q7616_RS04000 (Q7616_04005) proC 773451..774266 (-) 816 WP_005649013.1 pyrroline-5-carboxylate reductase -
  Q7616_RS04005 (Q7616_04010) - 774927..775817 (+) 891 WP_005656305.1 replication initiation protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37076.41 Da        Isoelectric Point: 4.7793

>NTDB_id=792178 Q7616_RS03980 WP_005649027.1 769842..770849(+) (ruvB) [Haemophilus influenzae strain 2016N21-284]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=792178 Q7616_RS03980 WP_005649027.1 769842..770849(+) (ruvB) [Haemophilus influenzae strain 2016N21-284]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCACAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCGGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTGGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGCATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGATTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCGAGAGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507