Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOP6_RS02975 Genome accession   NZ_AP022810
Coordinates   620849..621322 (+) Length   157 a.a.
NCBI ID   WP_155875148.1    Uniprot ID   -
Organism   Desulfuromonas sp. AOP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 615849..626322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOP6_RS02960 (AOP6_0588) - 617453..618244 (-) 792 WP_155875145.1 undecaprenyl-diphosphate phosphatase -
  AOP6_RS02965 (AOP6_0589) - 618313..619995 (-) 1683 WP_155875146.1 ribonuclease J -
  AOP6_RS02970 (AOP6_0590) - 619992..620708 (-) 717 WP_155875147.1 lysophospholipid acyltransferase family protein -
  AOP6_RS02975 (AOP6_0591) ssb 620849..621322 (+) 474 WP_155875148.1 single-stranded DNA-binding protein Machinery gene
  AOP6_RS02980 (AOP6_0592) - 621366..621761 (+) 396 WP_155875149.1 DUF2294 domain-containing protein -
  AOP6_RS02985 (AOP6_0593) - 622022..622906 (+) 885 WP_155877614.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AOP6_RS02990 (AOP6_0594) - 622908..624005 (+) 1098 WP_155875150.1 L-threonylcarbamoyladenylate synthase -
  AOP6_RS02995 (AOP6_0595) purE 623971..624507 (+) 537 WP_155875151.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AOP6_RS03000 (AOP6_0596) iorA 624528..626291 (+) 1764 WP_155875152.1 indolepyruvate ferredoxin oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17532.36 Da        Isoelectric Point: 5.7876

>NTDB_id=79154 AOP6_RS02975 WP_155875148.1 620849..621322(+) (ssb) [Desulfuromonas sp. AOP6]
MSVNKVILVGNLGKDPELRYTPSGAAVANFTIATTERYKDRDGQSQEKTEWHNIVAWRQLAEICGKYLHKGKQVYIEGKI
QTRSYDDRDGNKRYITEIVADQMQMLGRAGDDNNANQGQQRNAAPRSSRPAPAASSGPPAYEDYADPPFNPDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=79154 AOP6_RS02975 WP_155875148.1 620849..621322(+) (ssb) [Desulfuromonas sp. AOP6]
ATGTCCGTGAACAAAGTCATTCTTGTCGGCAACCTGGGCAAAGATCCTGAGTTGCGTTACACCCCCTCCGGGGCGGCCGT
GGCCAATTTCACCATCGCCACTACCGAACGCTACAAAGACCGCGACGGTCAGTCGCAGGAAAAGACCGAGTGGCACAACA
TCGTCGCCTGGCGTCAGCTCGCCGAGATCTGCGGCAAATATCTGCACAAAGGCAAACAGGTCTACATCGAAGGAAAGATT
CAGACGCGCTCCTACGACGATCGCGACGGCAACAAGCGTTACATCACCGAGATTGTCGCCGACCAGATGCAGATGCTCGG
CCGGGCCGGCGATGACAACAACGCCAATCAGGGACAGCAGCGCAATGCCGCGCCCCGCTCCAGTCGCCCCGCCCCTGCTG
CCTCCTCGGGCCCTCCGGCCTACGAGGATTACGCCGATCCCCCCTTCAATCCGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

48.851

100

0.541
  ssb Vibrio cholerae strain A1552

48.837

100

0.535
  ssb Neisseria meningitidis MC58

46.023

100

0.516
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.51
  ssb Latilactobacillus sakei subsp. sakei 23K

33.333

100

0.363

Multiple sequence alignment