NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	PUV55_RS07910	Genome accession	NZ_CP118165
Coordinates	1604271..1605398 (+)	Length	375 a.a.
NCBI ID	WP_274358638.1	Uniprot ID	-
Organism	Glaesserella parasuis strain XP11
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1599271..1610398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUV55_RS07875 (PUV55_07875)	selA	1599778..1601163 (-)	1386	WP_016528595.1	L-seryl-tRNA(Sec) selenium transferase	-
PUV55_RS07885 (PUV55_07885)	-	1601697..1601837 (-)	141	WP_157686074.1	hypothetical protein	-
PUV55_RS07890 (PUV55_07890)	-	1601985..1602269 (-)	285	WP_016528596.1	hypothetical protein	-
PUV55_RS07895 (PUV55_07895)	-	1602250..1602393 (-)	144	WP_005712666.1	hypothetical protein	-
PUV55_RS07900 (PUV55_07900)	rfaD	1602485..1603411 (-)	927	WP_021110191.1	ADP-glyceromanno-heptose 6-epimerase	-
PUV55_RS07905 (PUV55_07905)	def	1603423..1603935 (-)	513	WP_005712670.1	peptide deformylase	-
PUV55_RS07910 (PUV55_07910)	dprA	1604271..1605398 (+)	1128	WP_274358638.1	DNA-processing protein DprA	Machinery gene
PUV55_RS07915 (PUV55_07915)	-	1605451..1606287 (+)	837	WP_261573890.1	heme/hemin ABC transporter substrate-binding protein	-
PUV55_RS07920 (PUV55_07920)	-	1606287..1607273 (+)	987	WP_035491346.1	FecCD family ABC transporter permease	-
PUV55_RS07925 (PUV55_07925)	-	1607273..1608061 (+)	789	WP_207342738.1	heme ABC transporter ATP-binding protein	-
PUV55_RS07930 (PUV55_07930)	-	1608757..1609269 (+)	513	Protein_1545	ESPR-type extended signal peptide-containing protein	-
PUV55_RS07935 (PUV55_07935)	-	1609398..1610384 (-)	987	WP_005714908.1	IS110 family transposase	-

Sequence

Protein

Download Length: 375 a.a. Molecular weight: 41765.78 Da Isoelectric Point: 5.1145

                                >NTDB_id=790912 PUV55_RS07910 WP_274358638.1 1604271..1605398(+) (dprA) [Glaesserella parasuis strain XP11]

MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQQILTLF

DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKYQLAVTSGLAIGIDGFCHQRAVN

ENGITIAVLGSGLDQVYPARHKKLAEQIVETSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR

YALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENIDDILEAIAWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPEL

TACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT

Nucleotide

Download Length: 1128 bp

                                >NTDB_id=790912 PUV55_RS07910 WP_274358638.1 1604271..1605398(+) (dprA) [Glaesserella parasuis strain XP11]

ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA

AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT

GGTTTAATCCTGAGCATAAATGGATTGATCAGGCGTTACAATGGGCAGAACAGGATCAGCAACAGATTTTAACCTTATTT

GACGAAGATTATCCTTTTTTATTGAAGCAGATCAGTACTGCTCCCCCTGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT

ATCGTTACCGCAGATAGCTATCGTCGGCAGTCGAGATTACTCCCACTATGGCGAACACTGGGCAGGGCATTTTTCGGCGG

AATTAGTGAAATATCAGCTTGCTGTCACCAGTGGCTTAGCCATAGGCATAGATGGATTTTGCCATCAACGTGCGGTCAAT

GAAAACGGGATTACTATTGCGGTTTTAGGCAGTGGGCTAGACCAAGTTTACCCTGCTCGCCACAAAAAACTTGCGGAACA

AATCGTTGAAACAAGCGGTGCGTTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAAAATTTCCCTAGACGAA

ATCGCATCATCAGCGGATTATCTCTCGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTAATTACTGCCCGT

TATGCGTTAGAGCAAGGGAGAGAAGTCTTTGCATTGCCGAACGCAGTACAAAACCCGTATAGCGAAGGGTGCCATAAATT

GATTAAAGAAGGGGCATTACTGGTTGAAAATATTGACGACATTTTAGAAGCGATTGCGTGGCAACGGCAATCAGTGCATA

TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGAACCCAAATTTGCAAAAAATCTACCTGAACTG

ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATTAGCATTGATGATCTTGCCAAAGCGACGGATAT

GGCGGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGTGTTGTGAAGCAGGTGAGTGGGGGGTATGTAA

TCACTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)

DprA winged helix domain (DprA_WH)

(313-371)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Glaesserella parasuis strain SC1401	98.133	100	0.981
dprA	Haemophilus influenzae Rd KW20	53.529	90.667	0.485
dprA	Vibrio campbellii strain DS40M4	46.649	99.467	0.464
dprA	Vibrio cholerae strain A1552	43.617	100	0.437
dprA	Legionella pneumophila strain ERS1305867	38.889	100	0.392
dprA	Neisseria gonorrhoeae MS11	42.994	83.733	0.36

Detailed information NTG0790912