Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PUV55_RS07385 Genome accession   NZ_CP118165
Coordinates   1493966..1494430 (+) Length   154 a.a.
NCBI ID   WP_005711781.1    Uniprot ID   K4JWE9
Organism   Glaesserella parasuis strain XP11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488966..1499430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS07365 (PUV55_07365) - 1489216..1490187 (-) 972 WP_012621529.1 IS110 family transposase -
  PUV55_RS07370 (PUV55_07370) - 1490683..1491654 (+) 972 WP_012621529.1 IS110 family transposase -
  PUV55_RS07375 (PUV55_07375) gmk 1491723..1492349 (+) 627 WP_035491622.1 guanylate kinase -
  PUV55_RS07380 (PUV55_07380) radA 1492402..1493778 (-) 1377 WP_274358630.1 DNA repair protein RadA -
  PUV55_RS07385 (PUV55_07385) pilA 1493966..1494430 (+) 465 WP_005711781.1 pilin Machinery gene
  PUV55_RS07390 (PUV55_07390) pilB 1494478..1495863 (+) 1386 WP_160429046.1 GspE/PulE family protein Machinery gene
  PUV55_RS07395 (PUV55_07395) pilC 1495856..1497052 (+) 1197 WP_274358631.1 type II secretion system F family protein Machinery gene
  PUV55_RS07400 (PUV55_07400) - 1497049..1497717 (+) 669 WP_005711775.1 prepilin peptidase -
  PUV55_RS07405 (PUV55_07405) dapE 1497801..1498934 (+) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16379.04 Da        Isoelectric Point: 9.3428

>NTDB_id=790907 PUV55_RS07385 WP_005711781.1 1493966..1494430(+) (pilA) [Glaesserella parasuis strain XP11]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP

Nucleotide


Download         Length: 465 bp        

>NTDB_id=790907 PUV55_RS07385 WP_005711781.1 1493966..1494430(+) (pilA) [Glaesserella parasuis strain XP11]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4JWE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

100

100

1
  pilA Haemophilus influenzae Rd KW20

55.034

96.753

0.532
  pilA Haemophilus influenzae 86-028NP

54.362

96.753

0.526