Detailed information NTG0790909

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PUV55_RS07395
• Genome accession: NZ_CP118165
• Coordinates: 1495856..1497052 (+)
• Length: 398 a.a.
• NCBI ID: WP_274358631.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain XP11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1490856..1502052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUV55_RS07375 (PUV55_07375)	gmk	1491723..1492349 (+)	627	WP_035491622.1	guanylate kinase	-
PUV55_RS07380 (PUV55_07380)	radA	1492402..1493778 (-)	1377	WP_274358630.1	DNA repair protein RadA	-
PUV55_RS07385 (PUV55_07385)	pilA	1493966..1494430 (+)	465	WP_005711781.1	pilin	Machinery gene
PUV55_RS07390 (PUV55_07390)	pilB	1494478..1495863 (+)	1386	WP_160429046.1	GspE/PulE family protein	Machinery gene
PUV55_RS07395 (PUV55_07395)	pilC	1495856..1497052 (+)	1197	WP_274358631.1	type II secretion system F family protein	Machinery gene
PUV55_RS07400 (PUV55_07400)	-	1497049..1497717 (+)	669	WP_005711775.1	prepilin peptidase	-
PUV55_RS07405 (PUV55_07405)	dapE	1497801..1498934 (+)	1134	WP_005711772.1	succinyl-diaminopimelate desuccinylase	-
PUV55_RS07410 (PUV55_07410)	clpX	1499008..1500258 (-)	1251	WP_160429045.1	ATP-dependent protease ATP-binding subunit ClpX	-
PUV55_RS07415 (PUV55_07415)	clpP	1500265..1500846 (-)	582	WP_010787003.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
PUV55_RS07420 (PUV55_07420)	-	1500947..1501336 (+)	390	WP_005711765.1	SufE family protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45604.36 Da
• Isoelectric Point: 10.0610

>NTDB_id=790909 PUV55_RS07395 WP_274358631.1 1495856..1497052(+) (pilC) [Glaesserella parasuis strain XP11]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPILMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=790909 PUV55_RS07395 WP_274358631.1 1495856..1497052(+) (pilC) [Glaesserella parasuis strain XP11]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATATTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	98.995	100	0.99
pilC	Haemophilus influenzae 86-028NP	38.653	100	0.389
pilC	Haemophilus influenzae Rd KW20	38.653	100	0.389