Detailed information NTG0079058

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PotMrB4_RS05670
• Genome accession: NZ_AP022642
• Coordinates: 1198858..1199730 (-)
• Length: 290 a.a.
• NCBI ID: WP_172432748.1
• Uniprot ID: -
• Organism: Metapseudomonas otitidis strain MrB4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1193858..1204730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PotMrB4_RS05630 (PtoMrB4_11200)	-	1195137..1195310 (-)	174	WP_044406847.1	DUF3094 family protein	-
PotMrB4_RS05635 (PtoMrB4_11210)	-	1195390..1196016 (-)	627	WP_172435045.1	DUF1780 domain-containing protein	-
PotMrB4_RS05640 (PtoMrB4_11220)	-	1196136..1196561 (+)	426	WP_107331796.1	GNAT family N-acetyltransferase	-
PotMrB4_RS05645 (PtoMrB4_11230)	-	1196558..1197034 (+)	477	WP_052807598.1	hypothetical protein	-
PotMrB4_RS05650 (PtoMrB4_11240)	-	1197031..1197717 (+)	687	WP_142011982.1	energy-coupling factor ABC transporter permease	-
PotMrB4_RS05655 (PtoMrB4_11250)	-	1197828..1198043 (+)	216	WP_160481384.1	hypothetical protein	-
PotMrB4_RS05660 (PtoMrB4_11260)	yacG	1198056..1198253 (-)	198	WP_044406857.1	DNA gyrase inhibitor YacG	-
PotMrB4_RS05665 (PtoMrB4_11270)	coaE	1198250..1198861 (-)	612	WP_069559818.1	dephospho-CoA kinase	-
PotMrB4_RS05670 (PtoMrB4_11280)	pilD	1198858..1199730 (-)	873	WP_172432748.1	A24 family peptidase	Machinery gene
PotMrB4_RS05675 (PtoMrB4_11290)	pilC	1199733..1200950 (-)	1218	WP_172432749.1	type II secretion system F family protein	Machinery gene
PotMrB4_RS05680 (PtoMrB4_11300)	pilB	1200954..1202657 (-)	1704	WP_172432750.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PotMrB4_RS05685 (PtoMrB4_11310)	pilE	1202881..1203363 (+)	483	WP_172432751.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31880.87 Da
• Isoelectric Point: 6.4705

>NTDB_id=79058 PotMrB4_RS05670 WP_172432748.1 1198858..1199730(-) (pilD) [Metapseudomonas otitidis strain MrB4]
MPLVDFLAGNLPAFVFCVFLLGLLVGSFLNVVIYRLPVMMFRDWKIQAREALELPPEPPGETFNLVLPNSRCPHCQHEIK
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELASGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLIVNSQGLFTGLEDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=79058 PotMrB4_RS05670 WP_172432748.1 1198858..1199730(-) (pilD) [Metapseudomonas otitidis strain MrB4]
ATGCCTCTTGTTGACTTTCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCGTATTCCTCCTCGGTCTCTTGGTCGGCAG
TTTCCTCAACGTGGTCATTTACCGCTTGCCGGTGATGATGTTCCGCGATTGGAAGATCCAGGCCCGCGAGGCCCTGGAGT
TGCCGCCGGAGCCGCCGGGCGAGACGTTCAACCTGGTTCTGCCGAACTCCCGCTGCCCCCATTGCCAGCACGAAATCAAG
GCCTGGGAGAACATCCCGGTGGTCAGTTGGCTGGCACTGGGCGGCAAATGTTCGTCGTGCAAGGCACCGATCAAGAAGCG
CTACCCGTTGGTGGAGTTGGCCAGCGGGCTGCTTTCCGCGTACGTCGCCTGGCACTTCGGCTTCACCTGGCAGGCGGGCG
CCTTCCTGGTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACATCGACCACCAGCTGCTCCCCGACTCCCTGGTG
CTGCCGCTGCTCTGGCTCGGGCTGATCGTCAACAGCCAGGGGCTGTTCACCGGGCTGGAGGATGCCCTCTGGGGCGCGGT
AGGCGGCTACCTGAGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAAGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGT
GCGGTACTGGGGATCATCATCCTCAAGCTGCGCGATGCCGACAGCGGCACGCCCATTCCCTTCGGCCCCTACCTGGCAAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.632	98.276	0.517
pilD	Vibrio cholerae strain A1552	55.431	92.069	0.51
pilD	Acinetobacter nosocomialis M2	51.93	98.276	0.51
pilD	Vibrio campbellii strain DS40M4	53.114	94.138	0.5
pilD	Neisseria gonorrhoeae MS11	51.724	90	0.466