Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PotMrB4_RS00935 Genome accession   NZ_AP022642
Coordinates   191853..193346 (-) Length   497 a.a.
NCBI ID   WP_172432277.1    Uniprot ID   A0A679GF38
Organism   Metapseudomonas otitidis strain MrB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 186853..198346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PotMrB4_RS00925 (PtoMrB4_01850) - 187753..189729 (+) 1977 WP_172432276.1 methyl-accepting chemotaxis protein -
  PotMrB4_RS00930 (PtoMrB4_01860) betT 189770..191746 (-) 1977 WP_044400764.1 choline BCCT transporter BetT -
  PotMrB4_RS00935 (PtoMrB4_01870) comM 191853..193346 (-) 1494 WP_172432277.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PotMrB4_RS00940 (PtoMrB4_01880) - 193384..193647 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  PotMrB4_RS00945 (PtoMrB4_01890) glnK 194058..194396 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  PotMrB4_RS00950 (PtoMrB4_01900) - 194431..195750 (+) 1320 WP_044400778.1 ammonium transporter -
  PotMrB4_RS00955 (PtoMrB4_01910) - 195868..196293 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PotMrB4_RS00960 (PtoMrB4_01920) sutA 196369..196689 (+) 321 WP_044400784.1 transcriptional regulator SutA -
  PotMrB4_RS00965 (PtoMrB4_01930) - 196747..197451 (-) 705 WP_172432278.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52692.57 Da        Isoelectric Point: 7.4046

>NTDB_id=79049 PotMrB4_RS00935 WP_172432277.1 191853..193346(-) (comM) [Metapseudomonas otitidis strain MrB4]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLTVFAVGHL
LELAAHLNGQSPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLVDETHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAGEVGRARRRQLARQGCANAFLDLSRLHQHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADAPD
IQRHHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=79049 PotMrB4_RS00935 WP_172432277.1 191853..193346(-) (comM) [Metapseudomonas otitidis strain MrB4]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCACCCGCCGTCACGGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTCCCGGAAACCGCCGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGCATCACCCTCAGCCTTGCACCAGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCAGCCCTGGAGCAGTTGGAGTGCCT
CGGCGAGCTGGCGCTGTCCGGTGCCCTGCGTCCGGTGCAGGGCGTGTTGCCCGCTGCGCTGGCGGCGCGCGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGGGAAAACGCCGAGGAGGCCAGTCTGGCCAGCGGCCTGACGGTGTTCGCCGTGGGTCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGTCGCCGCTGGCACCGTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTATCCCGATCTCGCCGATGTCCAGGGCCAACTGGCAGCCAAGCGTGCGCTGCTGGTGGCCGCCGCAGGAGCCCACAACC
TGTTGCTGTCCGGCCCGCCCGGCACCGGCAAAACACTGCTGGCCAGCCGCCTGCCAGGCCTGCTGCCACCGCTGGAGGAA
CACGAGGCCCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCGCCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGGGGCAGTCGTCCGAAACCCGGCGAGATCACCCTGGCGC
ACCAGGGTGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGC
GGCGAGATCATCATCGCCCGGGCCAACGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTAGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGTCGACGAGACCCACCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACGCACCTGGGCGCGCCCGTCAGCGGC
GGGCTCGACAGTGCCACCGCTGCCGGGGAAGTCGGACGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCAGCACTGTCCGCTGACGCCCGACGACCAGCATTGGCTGGAGCAGGCCTGCGAGC
GCCTCGGGTTGTCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGCGCCCGAC
ATCCAGCGCCACCACCTGGCCGAGGCCCTGCAGTACCGGCCGACCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679GF38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.74

100

0.567
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Haemophilus influenzae Rd KW20

54.8

100

0.551
  comM Legionella pneumophila str. Paris

49.802

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.802

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment