Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PUP72_RS27980 Genome accession   NZ_CP118134
Coordinates   6137904..6139400 (+) Length   498 a.a.
NCBI ID   WP_056847025.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain ATCC 17413     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6132904..6144400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP72_RS27950 (PUP72_27950) - 6133337..6134032 (+) 696 WP_274356981.1 HAD family hydrolase -
  PUP72_RS27955 (PUP72_27955) sutA 6134226..6134558 (-) 333 WP_043046902.1 transcriptional regulator SutA -
  PUP72_RS27960 (PUP72_27960) - 6134661..6135086 (-) 426 WP_068965770.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PUP72_RS27965 (PUP72_27965) - 6135294..6136631 (-) 1338 WP_043046900.1 ammonium transporter -
  PUP72_RS27970 (PUP72_27970) glnK 6136666..6137004 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PUP72_RS27975 (PUP72_27975) - 6137428..6137691 (+) 264 WP_046070065.1 accessory factor UbiK family protein -
  PUP72_RS27980 (PUP72_27980) comM 6137904..6139400 (+) 1497 WP_056847025.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PUP72_RS27985 (PUP72_27985) - 6139407..6139982 (-) 576 WP_046070068.1 TetR/AcrR family transcriptional regulator -
  PUP72_RS27990 (PUP72_27990) - 6140097..6141011 (+) 915 WP_059396700.1 ABC transporter six-transmembrane domain-containing protein -
  PUP72_RS27995 (PUP72_27995) - 6141015..6142991 (-) 1977 WP_046070070.1 methyl-accepting chemotaxis protein -
  PUP72_RS28000 (PUP72_28000) - 6143169..6144089 (-) 921 WP_274356987.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53464.69 Da        Isoelectric Point: 7.9135

>NTDB_id=790278 PUP72_RS27980 WP_056847025.1 6137904..6139400(+) (comM) [Pseudomonas synxantha strain ATCC 17413]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRPVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLQPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQI
GETTAQASAQVAQARERQQQRQGCANAFLDLPRLREHCQLAKADETWLEAACERLTLSLRAAHRLLKVARTLADLEQVDG
IARHHLAEALQYRPAAIG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=790278 PUP72_RS27980 WP_056847025.1 6137904..6139400(+) (comM) [Pseudomonas synxantha strain ATCC 17413]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAGGTGCATATGGCCAA
TGGCCTGCCATCACTGACACTGGTGGGTTTGCCGGAGACGGCGGTGAAAGAGAGCAAAGACCGCGTGCGCAGTGCCATTC
TGAATTCGGCGCTGCAATACCCTGCACGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCTTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGATGAGGTGGAGTGCCT
GGGAGAGCTGGCGCTATCCGGCGAGGTGCGGCCGGTGAAAGGCGTGCTGCCGGCAGCACTGGCAGCGCGCAAGGCTGGGC
GCACCGTGATAGTGCCCCGAGCCAATGCCGAGGAAGCCTGCCTGGCGTCTGGATTGAAAGTGATTGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAATGGACACGTGCCGATTGAACCGTACACATCCGACGGCCTGCTGTATTTGAACAAACC
CTACCCGGACCTGAGTGAGGTACAGGGCCAATTGGCGGCCAAGCGTGCGCTGCTGATCGCCGCGGCCGGTGCGCATAACC
TGTTGTTCAGTGGCCCCCCGGGCACCGGTAAGACCCTGCTCGCCAGCCGGCTACCGGGTTTGCTGCCGCCGCTGAGCGAG
CAGGAAGCCCTGGAAGTTGCAGCGATCCAATCCGTGGTCAGCCTCCAGCCCCTGAGCCATTGGCCTAACCGCCCGTTCCG
GCAACCGCACCATTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCACAACCGGGGGAAATCACCCTGGCCC
ACCACGGGGTGCTGTTCCTGGATGAACTGCCGGAGTTTGATCGTAAGGTGCTTGAAGTGCTGCGCGAGCCATTGGAGTCT
GGGCATATCGTGATCTCTCGAGCCCGTGACCGGGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCTTGCGGCTACATGGGTGAGCCCAGTGGGCGTTGCCGGTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGCATTGACTTGCACCTGACGGTGGCCCGGGAGACCACTGCGCTGAACCCCTCCCAACAGATC
GGCGAAACCACCGCTCAGGCATCCGCCCAGGTAGCGCAAGCCCGCGAGCGTCAGCAACAACGCCAGGGCTGTGCCAATGC
GTTTCTCGACCTGCCGCGGCTGCGCGAACACTGCCAGCTGGCAAAAGCCGATGAAACCTGGCTGGAGGCCGCGTGTGAAC
GCCTGACGCTATCCCTGCGCGCCGCACACCGGCTGCTCAAGGTAGCGCGCACGCTAGCGGATCTTGAGCAAGTAGACGGC
ATCGCCCGCCATCATTTGGCGGAAGCCTTGCAATACCGACCGGCCGCGATTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.556
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.468