Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PUW25_RS25145 Genome accession   NZ_CP118108
Coordinates   5422279..5422767 (-) Length   162 a.a.
NCBI ID   WP_047912572.1    Uniprot ID   A0AAX3MYH1
Organism   Paenibacillus urinalis strain 2022CK-00829     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5417279..5427767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW25_RS25125 (PUW25_25125) - 5417443..5418408 (-) 966 WP_047912576.1 ABC transporter permease -
  PUW25_RS25130 (PUW25_25130) - 5418487..5420256 (-) 1770 WP_047912575.1 ABC transporter substrate-binding protein -
  PUW25_RS25135 (PUW25_25135) - 5421220..5421846 (-) 627 WP_047912574.1 M15 family metallopeptidase -
  PUW25_RS25140 (PUW25_25140) rpsR 5421987..5422259 (-) 273 WP_047912573.1 30S ribosomal protein S18 -
  PUW25_RS25145 (PUW25_25145) ssbA 5422279..5422767 (-) 489 WP_047912572.1 single-stranded DNA-binding protein Machinery gene
  PUW25_RS25150 (PUW25_25150) rpsF 5422818..5423108 (-) 291 WP_047912571.1 30S ribosomal protein S6 -
  PUW25_RS25155 (PUW25_25155) - 5423326..5423520 (+) 195 WP_047912570.1 YjzC family protein -
  PUW25_RS25165 (PUW25_25165) - 5424154..5424366 (-) 213 WP_047912569.1 DUF951 domain-containing protein -
  PUW25_RS25170 (PUW25_25170) - 5424356..5425447 (-) 1092 WP_081872563.1 mechanosensitive ion channel family protein -
  PUW25_RS25175 (PUW25_25175) - 5425447..5425722 (-) 276 WP_047912568.1 DUF3343 domain-containing protein -
  PUW25_RS25180 (PUW25_25180) yyaC 5425828..5426433 (+) 606 WP_047912567.1 spore protease YyaC -
  PUW25_RS25185 (PUW25_25185) - 5426408..5426908 (-) 501 WP_047912566.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18057.83 Da        Isoelectric Point: 4.8369

>NTDB_id=790254 PUW25_RS25145 WP_047912572.1 5422279..5422767(-) (ssbA) [Paenibacillus urinalis strain 2022CK-00829]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTIAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRDGGNANNNGGGMREEPSYGGSGRGNNSNNNFSRNNQDPFSDDGKPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=790254 PUW25_RS25145 WP_047912572.1 5422279..5422767(-) (ssbA) [Paenibacillus urinalis strain 2022CK-00829]
TTGTTGAACCGAGTCATTCTGATCGGCCGGTTAACTCGTGACCCAGAATTGCGGTACACACCTGCAGGGGTAGCCGTAAC
GCAGTTTACCATTGCTGTAGACCGTCCGTTTACAAGCCAAGGCGGGGAAAGAGAAGCTGATTTTATACCGGTCGTTACCT
GGAGACAGCTAGCGGAGACTTGCGCAAATTATTTGCGTAAAGGACGTTTGACAGCCGTCGAAGGGCGCATCCAAGTAAGA
AACTACGAGAATAACGAAGGCAAGCGTGTATACGTAACTGAAGTTATTGCAGATAACGTTCGTTTCTTGGAATCCAACCG
TGATGGCGGCAACGCGAACAATAACGGTGGTGGTATGCGTGAAGAGCCTTCCTATGGAGGCAGCGGCCGCGGGAATAATA
GCAATAACAATTTCTCACGGAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATTTCGGATGATGATTTG
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.525
  ssb Neisseria meningitidis MC58

33.149

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

64.198

0.364
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.364