Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP/pknB   Type   Regulator
Locus tag   PUW42_RS06440 Genome accession   NZ_CP118095
Coordinates   1315917..1316981 (-) Length   354 a.a.
NCBI ID   WP_274980655.1    Uniprot ID   -
Organism   Aerococcus christensenii strain VSI03     
Function   activate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1310917..1321981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW42_RS06410 (PUW42_06410) - 1311746..1312108 (-) 363 WP_060776348.1 Asp23/Gls24 family envelope stress response protein -
  PUW42_RS06415 (PUW42_06415) rpmB 1312405..1312593 (-) 189 WP_060776349.1 50S ribosomal protein L28 -
  PUW42_RS06420 (PUW42_06420) - 1312741..1313406 (-) 666 WP_274980653.1 thiamine diphosphokinase -
  PUW42_RS06425 (PUW42_06425) rpe 1313425..1314072 (-) 648 WP_082715742.1 ribulose-phosphate 3-epimerase -
  PUW42_RS06430 (PUW42_06430) rsgA 1314075..1314962 (-) 888 WP_274981244.1 ribosome small subunit-dependent GTPase A -
  PUW42_RS06435 (PUW42_06435) - 1314997..1315875 (-) 879 WP_274980654.1 PASTA domain-containing protein -
  PUW42_RS06440 (PUW42_06440) stkP/pknB 1315917..1316981 (-) 1065 WP_274980655.1 protein kinase domain-containing protein Regulator
  PUW42_RS06445 (PUW42_06445) - 1316978..1317721 (-) 744 WP_060776352.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  PUW42_RS06450 (PUW42_06450) rsmB 1317721..1319121 (-) 1401 WP_060936620.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PUW42_RS06455 (PUW42_06455) fmt 1319084..1320049 (-) 966 WP_274980656.1 methionyl-tRNA formyltransferase -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 39464.04 Da        Isoelectric Point: 7.2343

>NTDB_id=790065 PUW42_RS06440 WP_274980655.1 1315917..1316981(-) (stkP/pknB) [Aerococcus christensenii strain VSI03]
MRTGQIIGERYRIIEHIGSGGMATVFLAYDPILERQVAIKFLRIGGNGLDDAKRRFKREAMSIAELDHPNVVNIYDVGED
MDGNYIVMEYVDGVDLKSYIKDHQPFSLREYQEIMLQVLSGMASAHQKGIIHRDLKPQNIMIKPDGTVKIMDFGIALIST
ETSITQTNTIIGSVHYLSPEQARGSMASPQSDIYSLGIVSFEMLTGQVPFDGESAVSIAIQHFQEDLPSISNYRKDVPQA
MQNVIRRATAKDPEDRYQTCEEMAKALSTSLDPSRAYEAPYVVPSVSGGETRVMDKASLEKSLASTPRSFQPVKEDSKDL
AQTSVRKNPPQTHAKADKPKDKGKPHKKFLMPKK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=790065 PUW42_RS06440 WP_274980655.1 1315917..1316981(-) (stkP/pknB) [Aerococcus christensenii strain VSI03]
GTGAGAACGGGTCAAATTATAGGAGAACGTTACCGGATTATTGAACACATTGGTTCTGGAGGAATGGCAACTGTTTTCTT
GGCTTATGATCCTATTTTAGAACGACAGGTAGCTATTAAATTTCTTCGTATCGGTGGCAATGGACTAGATGATGCCAAGC
GTCGATTTAAACGGGAAGCAATGTCTATTGCTGAACTTGATCATCCGAATGTCGTTAATATTTATGATGTTGGGGAGGAT
ATGGATGGCAATTACATCGTTATGGAATATGTAGACGGTGTTGATTTAAAAAGTTATATCAAGGATCATCAACCATTTTC
TCTTAGAGAATACCAAGAAATTATGCTCCAGGTCCTCAGTGGAATGGCATCCGCCCATCAAAAGGGAATTATTCACCGCG
ACCTCAAACCGCAAAATATTATGATTAAACCGGATGGAACGGTTAAAATCATGGATTTTGGAATTGCTTTAATCTCTACT
GAAACTTCGATTACGCAAACCAATACGATTATTGGATCCGTGCATTACCTCTCTCCGGAGCAAGCCAGAGGATCCATGGC
TAGTCCTCAATCAGATATTTATTCCTTAGGGATTGTCAGCTTTGAAATGTTGACAGGACAGGTGCCTTTTGATGGGGAAT
CTGCGGTAAGTATTGCTATTCAACATTTTCAGGAAGACTTGCCGTCCATTTCTAATTACCGTAAAGATGTTCCCCAGGCC
ATGCAAAATGTGATTCGACGGGCGACAGCGAAAGACCCAGAGGATCGTTATCAGACCTGTGAGGAGATGGCTAAGGCTCT
CTCTACGAGTCTTGATCCTAGTCGAGCTTACGAAGCCCCTTATGTGGTACCAAGTGTCTCTGGTGGAGAGACGCGTGTGA
TGGACAAGGCAAGTTTAGAAAAAAGTTTAGCTTCAACTCCTCGGAGTTTTCAACCTGTAAAAGAGGATTCCAAAGATTTA
GCCCAAACTTCTGTTAGGAAAAATCCTCCTCAAACACATGCCAAGGCAGATAAGCCGAAAGATAAGGGAAAGCCGCATAA
GAAATTTCTTATGCCTAAAAAATAA

Domains


Predicted by InterproScan.

(11-261)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

53.438

90.395

0.483

  stkP Streptococcus pneumoniae D39

48.378

95.763

0.463

  stkP Streptococcus pneumoniae R6

48.378

95.763

0.463

  stkP Streptococcus pneumoniae TIGR4

48.378

95.763

0.463

  stkP Streptococcus pneumoniae Rx1

48.083

95.763

0.46

  pknB Streptococcus mutans UA159

56.25

81.356

0.458