Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HRR29_RS22205 Genome accession   NZ_AP022628
Coordinates   4620021..4621541 (+) Length   506 a.a.
NCBI ID   WP_172421411.1    Uniprot ID   -
Organism   Enterobacter asburiae strain A2563     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4615021..4626541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR29_RS22185 (EAA2563_43520) ilvE 4616588..4617517 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  HRR29_RS22190 (EAA2563_43530) ilvM 4617536..4617799 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  HRR29_RS22195 (EAA2563_43540) ilvG 4617796..4619442 (-) 1647 WP_033146919.1 acetolactate synthase 2 catalytic subunit -
  HRR29_RS23125 ilvX 4619445..4619495 (-) 51 WP_166792073.1 peptide IlvX -
  HRR29_RS22200 ilvL 4619582..4619680 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HRR29_RS22205 (EAA2563_43550) comM 4620021..4621541 (+) 1521 WP_172421411.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HRR29_RS22210 (EAA2563_43560) - 4621572..4621910 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  HRR29_RS22215 (EAA2563_43570) hdfR 4622029..4622850 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55035.94 Da        Isoelectric Point: 6.6904

>NTDB_id=79003 HRR29_RS22205 WP_172421411.1 4620021..4621541(+) (comM) [Enterobacter asburiae strain A2563]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLINSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIDDVEGCNDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=79003 HRR29_RS22205 WP_172421411.1 4620021..4621541(+) (comM) [Enterobacter asburiae strain A2563]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATTTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTTGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAATTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACCAGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACACGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAATGTTGAGGATGCGGGATGGCTGGAGGAGACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACCATTGATGACGTAGAGGGGTGCAATGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Vibrio campbellii strain DS40M4

58.25

99.407

0.579
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435

Multiple sequence alignment