Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   PUW52_RS10625 Genome accession   NZ_CP118078
Coordinates   2083442..2084632 (+) Length   396 a.a.
NCBI ID   WP_070812015.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2078442..2089632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS10600 (PUW52_10600) comE 2080249..2080998 (-) 750 WP_022526721.1 competence system response regulator transcription factor ComE Regulator
  PUW52_RS10605 (PUW52_10605) comD/comD2 2080998..2082323 (-) 1326 WP_274984617.1 GHKL domain-containing protein Regulator
  PUW52_RS10610 (PUW52_10610) - 2082341..2082487 (-) 147 WP_003029519.1 bacteriocin -
  PUW52_RS10620 (PUW52_10620) rlmH 2082769..2083248 (-) 480 WP_024052476.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PUW52_RS10625 (PUW52_10625) htrA 2083442..2084632 (+) 1191 WP_070812015.1 trypsin-like peptidase domain-containing protein Regulator
  PUW52_RS10630 (PUW52_10630) spo0J 2084687..2085454 (+) 768 WP_274984540.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41667.61 Da        Isoelectric Point: 9.4264

>NTDB_id=789871 PUW52_RS10625 WP_070812015.1 2083442..2084632(+) (htrA) [Streptococcus anginosus strain VSI16]
MKNSSNFTKKLLLLFMVLAIGFIGGLLGNLTSSKLSTNSSTTTKVNQVTTAYKNTNSTTQAVSKVKDAVVSVITYANNNS
QNSVFGNDDSNNNNDNSQQVASEGSGVIYKKDGKYAYLVTNTHVISGAKKVDIRLADGNKVPGEIVGSDTYSDISVVRIS
ADKVKSVAEFGDSSKLTVGETAIAIGSPLGSNYANTVTQGIISSLNRNVSLKSEDGQTISTQAIQTDTAINPGNSGGPLV
NIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVINIINQLEANGTVTRPALGIQMIDITNLSSSDLSRLKLPSKITSGV
VVRSAQSGMPSEGKLQKYDVITKVDDKEISSTSDLQSALYKHSIGDNIKITFYRDGKETTTTIKLTKSTKDLDSNN

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=789871 PUW52_RS10625 WP_070812015.1 2083442..2084632(+) (htrA) [Streptococcus anginosus strain VSI16]
ATGAAAAACTCTTCAAATTTCACAAAAAAATTGTTATTGCTTTTCATGGTCTTAGCTATAGGTTTTATCGGTGGTTTACT
TGGAAACTTAACTTCATCTAAATTATCAACAAATAGCTCTACAACGACTAAAGTTAATCAAGTTACTACTGCTTATAAAA
ATACAAATTCCACAACACAAGCTGTGAGTAAAGTGAAAGATGCTGTGGTATCCGTTATTACCTATGCTAATAATAATTCA
CAAAACAGCGTGTTTGGAAATGATGATTCAAATAATAACAATGATAATTCTCAACAAGTAGCTAGCGAAGGATCTGGGGT
TATTTATAAAAAAGATGGAAAATACGCTTACTTAGTAACCAATACTCACGTTATCAGTGGTGCTAAAAAAGTTGACATTC
GTTTAGCAGATGGTAATAAAGTTCCTGGAGAAATTGTAGGGTCAGATACTTATTCTGATATCTCCGTTGTTCGAATTAGT
GCTGATAAAGTAAAATCAGTTGCTGAATTTGGAGATTCTAGTAAATTGACGGTTGGTGAGACAGCTATTGCGATTGGAAG
TCCGCTCGGATCAAATTACGCTAACACTGTGACGCAAGGAATTATTTCTAGTTTAAATCGTAATGTTTCTTTAAAATCTG
AAGACGGACAAACGATTTCAACACAAGCTATTCAAACAGACACAGCTATTAACCCAGGGAACTCTGGTGGACCACTTGTG
AATATCCAAGGACAAGTAATTGGTATTACTTCAAGTAAAATAGCTAGCAACGGCGGAACTTCGGTTGAAGGATTAGGATT
TGCTATTCCATCTAATGATGTTATAAACATTATTAACCAGTTAGAAGCAAATGGAACTGTTACACGACCAGCTCTAGGAA
TCCAAATGATTGACATCACTAATCTGTCTAGTTCAGATCTATCACGCTTAAAACTTCCATCAAAAATAACTAGTGGAGTT
GTCGTACGTTCAGCTCAATCTGGAATGCCATCTGAAGGAAAACTTCAAAAATATGATGTGATTACAAAAGTAGATGATAA
AGAAATTTCTTCAACAAGTGATTTACAATCCGCTTTATACAAACATTCAATTGGTGACAACATAAAAATCACTTTCTATC
GTGATGGAAAAGAAACTACTACTACCATTAAGCTTACAAAATCTACAAAAGATTTAGATTCAAATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

75.312

100

0.763

  htrA Streptococcus mitis NCTC 12261

72.292

100

0.725

  htrA Streptococcus pneumoniae Rx1

72.04

100

0.722

  htrA Streptococcus pneumoniae D39

72.04

100

0.722

  htrA Streptococcus pneumoniae R6

72.04

100

0.722

  htrA Streptococcus pneumoniae TIGR4

72.04

100

0.722

  htrA Streptococcus mutans UA159

55.216

99.242

0.548