Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PUW52_RS03005 Genome accession   NZ_CP118078
Coordinates   577432..578394 (+) Length   320 a.a.
NCBI ID   WP_274984570.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572432..583394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS02985 (PUW52_02985) - 572707..574698 (+) 1992 WP_024051957.1 PRD domain-containing protein -
  PUW52_RS02990 (PUW52_02990) - 574711..575028 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  PUW52_RS02995 (PUW52_02995) - 575051..575557 (+) 507 WP_024051956.1 hypothetical protein -
  PUW52_RS03000 (PUW52_03000) celB 575597..576940 (+) 1344 WP_024051955.1 PTS cellobiose transporter subunit IIC -
  PUW52_RS03005 (PUW52_03005) coiA 577432..578394 (+) 963 WP_274984570.1 competence protein CoiA family protein Machinery gene
  PUW52_RS03010 (PUW52_03010) pepF 578414..580216 (+) 1803 WP_024051953.1 oligoendopeptidase F Regulator
  PUW52_RS03015 (PUW52_03015) - 580218..580937 (+) 720 WP_274984571.1 O-methyltransferase -
  PUW52_RS03020 (PUW52_03020) prsA 581007..581945 (+) 939 WP_024051951.1 peptidylprolyl isomerase PrsA -
  PUW52_RS03025 (PUW52_03025) - 582083..582652 (+) 570 WP_081333904.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 38030.74 Da        Isoelectric Point: 8.7510

>NTDB_id=789838 PUW52_RS03005 WP_274984570.1 577432..578394(+) (coiA) [Streptococcus anginosus strain VSI16]
MLMACQENGKMLNAVEDTVNPLDRFLCPACKEAVRFKNGKVMRSHFAHISLKNCHFSTENESAEHLNLKTALFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYRQHGYRVFWLLGKKLWLKDSLTNLQKDFLYFSQNM
GFHLWELDEQQQLLRLKYLIHEDLHGKVQYKEKSFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICSYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNFQILYPPAFYARFLAIFMIE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=789838 PUW52_RS03005 WP_274984570.1 577432..578394(+) (coiA) [Streptococcus anginosus strain VSI16]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGGCTTGTAAGGAAGCGGTGCGATTTAAGAATGGCAAGGTGATGCGATCGCATTTTGCTCATATTTCCTTGAAAAACT
GCCATTTTTCTACGGAAAATGAAAGTGCAGAGCACCTAAATCTGAAAACTGCTTTGTTTACTTGGGCTAGAAAATCCAAT
CATGCGATTCAAGTAGAAGCTTATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGCGCTTGA
AGTTCAGTGTAGCTCGCTTAGTCAAAAACGCTTAAAAGAGCGTACGGACAGTTATCGTCAGCATGGTTATCGCGTCTTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAGATTCCTTGACCAATTTACAAAAGGACTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATCTATGGGAATTAGACGAACAGCAACAGCTCTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAGAAAAGTTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCAGTTATGTGCGCCAGCAGCTCTATTATCAGCAGCCCAAA
TGGATGAAATGGCAGGCAGAATTGTATCAAACGGGTGATAATTTATTAACCAAAACGGCTAGTGACTTTTACCCGCAAGT
CCAACCTGTTCGTTCCAGCTCTTTCTGCCAGATTTTTCAAGATCTCACACCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATTTCCAAATTCTCTATCCTCCAGCTTTTTATGCAAGATTTTTGGCAATATTTATGATAGAA
TAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.5

100

0.525
  coiA Streptococcus pneumoniae Rx1

51.875

100

0.519
  coiA Streptococcus pneumoniae D39

51.875

100

0.519
  coiA Streptococcus pneumoniae R6

51.875

100

0.519
  coiA Streptococcus pneumoniae TIGR4

51.562

100

0.516
  coiA Lactococcus lactis subsp. cremoris KW2

43.827

100

0.444