Detailed information NTG0078979

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PS1M3_RS15865
• Genome accession: NZ_AP022624
• Coordinates: 3399840..3401348 (-)
• Length: 502 a.a.
• NCBI ID: WP_138740519.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. PS1M3
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3394840..3406348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PS1M3_RS15850 (PS1M3_31090)	-	3395261..3396337 (-)	1077	WP_138740521.1	hemolysin family protein	-
PS1M3_RS15855 (PS1M3_31100)	-	3396422..3398917 (+)	2496	WP_138740520.1	S9 family peptidase	-
PS1M3_RS15860 (PS1M3_31110)	-	3399102..3399806 (+)	705	WP_006791373.1	response regulator transcription factor	-
PS1M3_RS15865 (PS1M3_31120)	comM	3399840..3401348 (-)	1509	WP_138740519.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PS1M3_RS15870 (PS1M3_31130)	-	3401383..3401997 (-)	615	WP_006791375.1	trimeric intracellular cation channel family protein	-
PS1M3_RS15890 (PS1M3_31140)	cysQ	3402857..3403660 (-)	804	WP_006791377.1	3'(2'),5'-bisphosphate nucleotidase CysQ	-
PS1M3_RS15895 (PS1M3_31150)	nudE	3403653..3404225 (-)	573	WP_033035276.1	ADP compounds hydrolase NudE	-
PS1M3_RS15900 (PS1M3_31160)	yrfG	3404288..3404935 (+)	648	WP_006791379.1	GMP/IMP nucleotidase	-
PS1M3_RS15905 (PS1M3_31170)	-	3404932..3405555 (-)	624	WP_006791380.1	dUTP diphosphatase	-
PS1M3_RS15910 (PS1M3_31180)	-	3405639..3406007 (-)	369	WP_006791381.1	YacL family protein	-
PS1M3_RS15915 (PS1M3_31190)	-	3406123..3406347 (-)	225	WP_006791382.1	hypothetical protein	-

Sequence

Protein

• Length: 502 a.a.
• Molecular weight: 54972.02 Da
• Isoelectric Point: 7.4837

>NTDB_id=78979 PS1M3_RS15865 WP_138740519.1 3399840..3401348(-) (comM) [Pseudoalteromonas sp. PS1M3]
MSLARIYSRAQVGINAPEVIVEVHLGTGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQNRCCFLPIANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPAMS
DDEALSTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVIRYLSRVSGPFVDRIDLQIELPRLTSVELQSTKQEE
TSAQVRARVEAAYYIQLKRQGKVNARLNNKEMSIHCELAPAELQFLAKASEKLSLSPRSYHRVVKVARTISDLKGNEKIS
LDDLKEALNYRAFERLIAQLTK

Nucleotide

• Length: 1509 bp

>NTDB_id=78979 PS1M3_RS15865 WP_138740519.1 3399840..3401348(-) (comM) [Pseudoalteromonas sp. PS1M3]
ATGTCATTAGCTCGTATATATTCTCGTGCTCAGGTGGGTATTAATGCCCCTGAAGTTATTGTAGAGGTTCACTTAGGAAC
TGGTTTACCCGCATTCCACATTGTAGGCCTTCCCGAAGCCTCTGTTAAAGAGTCAAAAGACAGAGTGCGCAGCGCGCTTG
AAAACTCTCAATTTGGTTTTCCTGATCAACGTATTACTGTTAATTTAGCCCCAGCTGATTTACCCAAAGACGGTGGCCGG
TTTGATTTGGCCATTGCCGTAGGCATTTTGGTAGCATCAGGGCAAATAGTGTGCCCTGATATTCATAAATATGAGTTTTA
CGGTGAGCTTGCACTCAACGGTGAGGTACGCGGAGTAAATGCTATTTTGCCCTCTGTGCTTGCAGCTAAGGAACAAAACC
GCTGCTGTTTTTTACCCATAGCTAATGATAGCCTGGCAAGCCTTGTAAATGGCGTAAAGCGTAAAGCGGTAAGCTCTATT
CAAGAAGTATGGGGTGATTTACTAAACCAACAGCCGTTGCCGTTAAATATAGAGTATCCAGACTGTACGCAAGCACCTGA
CTTTTTACTCGATTTGAGCGACGTAAAAGGCCAGCCCGGGGCTAAACGTGTATTAGAAATAGCCGCTGCAGGCGGGCACA
ACCTGCTATTTTTAGGTCCACCGGGAACCGGTAAATCAATGCTTGCTCAGCGAATGGCCACAATAATGCCGGCTATGTCT
GACGATGAGGCACTTTCAACTGCCGCACTTTATTCAATTATTGGTCATTCAATCGATTTAACAAACTGGCGGCAACGCCC
TTTTCGTAATCCTCATCATACCTGTTCGGCGGTTGCATTAGTAGGTGGGTCATCAAACCCTAAGCCGGGTGAAATTTCGC
TGGCACACAATGGGGTATTATTTTTAGATGAACTACCAGAGTTTGAGCGTAAAGTACTCGACTCCCTTCGTGAGCCAATG
GAAACCGGTACGGTAACTATTTCGCGTGCGGCGCGGCAAATGGAGTTTCCTGCACAGTTTCAGCTCATTACAGCGTTAAA
CCCCAGTCCTACGGGAAGCCATACCGATAAACGAGCAACACCCGATCAGGTTATACGTTATTTATCTCGTGTTTCAGGCC
CTTTTGTTGACCGTATTGATTTGCAAATAGAGCTACCACGGTTAACCAGCGTTGAACTGCAAAGCACTAAGCAAGAAGAA
ACCAGTGCACAAGTACGTGCACGGGTAGAAGCAGCTTATTACATACAGTTAAAACGCCAAGGCAAAGTGAATGCGCGGCT
AAATAATAAAGAGATGAGTATTCACTGTGAGCTTGCCCCAGCAGAACTGCAGTTTTTGGCTAAGGCCAGTGAAAAGCTGT
CTTTATCACCGCGCTCTTACCATAGAGTTGTTAAGGTAGCGCGTACGATTAGCGATTTAAAAGGGAATGAAAAAATTAGT
TTAGACGATTTAAAAGAGGCATTAAATTACAGAGCCTTTGAACGATTAATTGCTCAACTTACTAAGTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (399-491)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.159	100	0.554
comM	Haemophilus influenzae Rd KW20	53.937	100	0.546
comM	Glaesserella parasuis strain SC1401	53.36	100	0.538
comM	Vibrio campbellii strain DS40M4	53.571	100	0.538
comM	Legionella pneumophila str. Paris	50.503	99.004	0.5
comM	Legionella pneumophila strain ERS1305867	50.503	99.004	0.5
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	42.688	100	0.43