Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PUW49_RS03380 Genome accession   NZ_CP118054
Coordinates   653973..655004 (+) Length   343 a.a.
NCBI ID   WP_024051954.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 648973..660004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW49_RS03360 (PUW49_03360) - 649248..651239 (+) 1992 WP_024051957.1 PRD domain-containing protein -
  PUW49_RS03365 (PUW49_03365) - 651252..651569 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  PUW49_RS03370 (PUW49_03370) - 651592..652098 (+) 507 WP_024051956.1 hypothetical protein -
  PUW49_RS03375 (PUW49_03375) celB 652138..653481 (+) 1344 WP_264349101.1 PTS cellobiose transporter subunit IIC -
  PUW49_RS03380 (PUW49_03380) coiA 653973..655004 (+) 1032 WP_024051954.1 competence protein CoiA family protein Machinery gene
  PUW49_RS03385 (PUW49_03385) pepF 654956..656758 (+) 1803 WP_274995018.1 oligoendopeptidase F Regulator
  PUW49_RS03390 (PUW49_03390) - 656760..657443 (+) 684 WP_024051952.1 O-methyltransferase -
  PUW49_RS03395 (PUW49_03395) prsA 657550..658488 (+) 939 WP_024051951.1 peptidylprolyl isomerase PrsA -
  PUW49_RS03400 (PUW49_03400) - 658626..659195 (+) 570 WP_081333904.1 LURP-one-related family protein -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40729.80 Da        Isoelectric Point: 9.1452

>NTDB_id=789664 PUW49_RS03380 WP_024051954.1 653973..655004(+) (coiA) [Streptococcus anginosus strain VSI37]
MLMACQENGKMLNAVEDTVNPLDRFLCPACKEAVRFKNGKVMRSHFAHISLKNCHFSTENESAEHLNLKTALFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYRQHGYRVFWLLGKKLWLKDSLTNLQKDFLYFSQNM
GFHLWELDEQQQLLRLKYLIHEDLHGKVQYKEKSFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICSYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNFQILYPPAFYAKIFGNIYDR
IGRTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=789664 PUW49_RS03380 WP_024051954.1 653973..655004(+) (coiA) [Streptococcus anginosus strain VSI37]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGGCTTGTAAGGAAGCGGTGCGATTTAAGAATGGCAAGGTGATGCGATCGCATTTTGCTCATATTTCCTTGAAAAACT
GCCATTTTTCTACGGAAAATGAAAGTGCAGAGCACCTAAATCTGAAAACTGCTTTGTTTACTTGGGCTAGAAAATCCAAT
CATGCGATTCAAGTAGAAGCTTATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGCGCTTGA
AGTTCAGTGTAGCTCGCTTAGTCAAAAACGCTTAAAAGAGCGTACGGACAGTTATCGTCAGCATGGTTATCGCGTCTTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAGATTCCTTGACCAATTTACAAAAGGACTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATCTATGGGAATTAGACGAACAGCAACAGCTCTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAGAAAAGTTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCAGTTATGTGCGCCAGCAGCTCTATTATCAGCAGCCCAAA
TGGATGAAATGGCAGGCAGAATTGTATCAAACGGGTGATAATTTATTAACCAAAACGGCTAGTGACTTTTACCCGCAAGT
CCAACCTGTTCGTTCCAGCTCTTTCTGCCAGATTTTTCAAGATCTCACACCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATTTCCAAATTCTCTATCCTCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAGA
ATAGGAAGGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGAACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.185

91.545

0.487

  coiA Streptococcus pneumoniae Rx1

52.548

91.545

0.481

  coiA Streptococcus pneumoniae D39

52.548

91.545

0.481

  coiA Streptococcus pneumoniae R6

52.548

91.545

0.481

  coiA Streptococcus pneumoniae TIGR4

52.229

91.545

0.478

  coiA Lactococcus lactis subsp. cremoris KW2

43.827

94.461

0.414