Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUT72_RS13475 Genome accession   NZ_CP117994
Coordinates   2861352..2861891 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain 20220413_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2856352..2866891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS13455 (PUT72_13455) - 2856671..2857003 (-) 333 WP_005381196.1 hypothetical protein -
  PUT72_RS13460 (PUT72_13460) - 2856996..2857646 (-) 651 WP_258456992.1 type II secretion system protein M -
  PUT72_RS13465 (PUT72_13465) - 2857643..2859088 (-) 1446 WP_005387799.1 hypothetical protein -
  PUT72_RS13470 (PUT72_13470) csrD 2859100..2861109 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  PUT72_RS13475 (PUT72_13475) ssb 2861352..2861891 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  PUT72_RS13480 (PUT72_13480) qstR 2862169..2862813 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUT72_RS13485 (PUT72_13485) galU 2862973..2863845 (+) 873 WP_238952127.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUT72_RS13490 (PUT72_13490) uvrA 2863995..2866817 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=789040 PUT72_RS13475 WP_005381235.1 2861352..2861891(-) (ssb) [Vibrio alginolyticus strain 20220413_2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=789040 PUT72_RS13475 WP_005381235.1 2861352..2861891(-) (ssb) [Vibrio alginolyticus strain 20220413_2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACGGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458