Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PUT72_RS13480 Genome accession   NZ_CP117994
Coordinates   2862169..2862813 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain 20220413_2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2857169..2867813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS13465 (PUT72_13465) - 2857643..2859088 (-) 1446 WP_005387799.1 hypothetical protein -
  PUT72_RS13470 (PUT72_13470) csrD 2859100..2861109 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  PUT72_RS13475 (PUT72_13475) ssb 2861352..2861891 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  PUT72_RS13480 (PUT72_13480) qstR 2862169..2862813 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUT72_RS13485 (PUT72_13485) galU 2862973..2863845 (+) 873 WP_238952127.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUT72_RS13490 (PUT72_13490) uvrA 2863995..2866817 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=789041 PUT72_RS13480 WP_005381237.1 2862169..2862813(+) (qstR) [Vibrio alginolyticus strain 20220413_2]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=789041 PUT72_RS13480 WP_005381237.1 2862169..2862813(+) (qstR) [Vibrio alginolyticus strain 20220413_2]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519