Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUN50_RS01795 Genome accession   NZ_CP117988
Coordinates   384619..385155 (+) Length   178 a.a.
NCBI ID   WP_005432828.1    Uniprot ID   A0A812GP34
Organism   Vibrio campbellii strain 20220413_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379619..390155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS01780 (PUN50_01780) uvrA 379683..382505 (-) 2823 WP_274290775.1 excinuclease ABC subunit UvrA -
  PUN50_RS01785 (PUN50_01785) galU 382644..383516 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUN50_RS01790 (PUN50_01790) qstR 383681..384325 (-) 645 WP_182053525.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUN50_RS01795 (PUN50_01795) ssb 384619..385155 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  PUN50_RS01800 (PUN50_01800) csrD 385403..387412 (+) 2010 WP_045454907.1 RNase E specificity factor CsrD -
  PUN50_RS01805 (PUN50_01805) - 387424..388872 (+) 1449 WP_274290776.1 MSHA biogenesis protein MshI -
  PUN50_RS01810 (PUN50_01810) gspM 388869..389519 (+) 651 WP_274290777.1 type II secretion system protein GspM -
  PUN50_RS01815 (PUN50_01815) - 389512..389841 (+) 330 WP_274290778.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19774.84 Da        Isoelectric Point: 4.9269

>NTDB_id=788949 PUN50_RS01795 WP_005432828.1 384619..385155(+) (ssb) [Vibrio campbellii strain 20220413_1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=788949 PUN50_RS01795 WP_005432828.1 384619..385155(+) (ssb) [Vibrio campbellii strain 20220413_1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTCCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GP34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.447

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489