Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PUN50_RS01790 Genome accession   NZ_CP117988
Coordinates   383681..384325 (-) Length   214 a.a.
NCBI ID   WP_182053525.1    Uniprot ID   A0AAQ2XZ63
Organism   Vibrio campbellii strain 20220413_1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378681..389325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS01780 (PUN50_01780) uvrA 379683..382505 (-) 2823 WP_274290775.1 excinuclease ABC subunit UvrA -
  PUN50_RS01785 (PUN50_01785) galU 382644..383516 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUN50_RS01790 (PUN50_01790) qstR 383681..384325 (-) 645 WP_182053525.1 LuxR C-terminal-related transcriptional regulator Regulator
  PUN50_RS01795 (PUN50_01795) ssb 384619..385155 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  PUN50_RS01800 (PUN50_01800) csrD 385403..387412 (+) 2010 WP_045454907.1 RNase E specificity factor CsrD -
  PUN50_RS01805 (PUN50_01805) - 387424..388872 (+) 1449 WP_274290776.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24581.49 Da        Isoelectric Point: 8.0591

>NTDB_id=788948 PUN50_RS01790 WP_182053525.1 383681..384325(-) (qstR) [Vibrio campbellii strain 20220413_1]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTTPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=788948 PUN50_RS01790 WP_182053525.1 383681..384325(-) (qstR) [Vibrio campbellii strain 20220413_1]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTAATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATAGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCACTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAATC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523