Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7F19_RS29545 Genome accession   NZ_CP130942
Coordinates   6298781..6299278 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2023CK-00048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6293781..6304278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7F19_RS29525 (Q7F19_29525) pchD 6294565..6296208 (+) 1644 WP_023435683.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  Q7F19_RS29530 (Q7F19_29530) pchC 6296205..6296960 (+) 756 WP_023435682.1 pyochelin biosynthesis editing thioesterase PchC -
  Q7F19_RS29535 (Q7F19_29535) pchB 6296960..6297265 (+) 306 WP_031285628.1 isochorismate lyase PchB -
  Q7F19_RS29540 (Q7F19_29540) pchA 6297262..6298692 (+) 1431 WP_023435680.1 isochorismate synthase PchA -
  Q7F19_RS29545 (Q7F19_29545) ssb 6298781..6299278 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  Q7F19_RS29550 (Q7F19_29550) - 6299295..6300683 (-) 1389 WP_023435679.1 MFS transporter -
  Q7F19_RS29555 (Q7F19_29555) uvrA 6300897..6303734 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  Q7F19_RS29560 (Q7F19_29560) bfr 6303806..6304270 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=788948 Q7F19_RS29545 WP_003114685.1 6298781..6299278(-) (ssb) [Pseudomonas aeruginosa strain 2023CK-00048]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=788948 Q7F19_RS29545 WP_003114685.1 6298781..6299278(-) (ssb) [Pseudomonas aeruginosa strain 2023CK-00048]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACTACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515