Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQ460_RS10945 Genome accession   NZ_CP117876
Coordinates   2425661..2426143 (+) Length   160 a.a.
NCBI ID   WP_274172689.1    Uniprot ID   -
Organism   Paenibacillus sp. KACC 21273     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2420661..2431143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS10910 (PQ460_10910) - 2421140..2421961 (+) 822 WP_274172683.1 S1 RNA-binding domain-containing protein -
  PQ460_RS10915 (PQ460_10915) - 2421973..2422695 (+) 723 WP_274172684.1 hypothetical protein -
  PQ460_RS10920 (PQ460_10920) - 2423031..2423489 (+) 459 WP_274172685.1 hypothetical protein -
  PQ460_RS10925 (PQ460_10925) - 2423507..2423836 (+) 330 WP_274172686.1 hypothetical protein -
  PQ460_RS10930 (PQ460_10930) - 2423934..2424095 (+) 162 WP_274172687.1 aspartyl-phosphate phosphatase Spo0E family protein -
  PQ460_RS10935 (PQ460_10935) - 2424169..2424612 (+) 444 WP_274172688.1 hypothetical protein -
  PQ460_RS10940 (PQ460_10940) - 2425021..2425656 (+) 636 WP_274172915.1 hypothetical protein -
  PQ460_RS10945 (PQ460_10945) ssbA 2425661..2426143 (+) 483 WP_274172689.1 single-stranded DNA-binding protein Machinery gene
  PQ460_RS10950 (PQ460_10950) - 2426263..2426475 (+) 213 WP_274172690.1 hypothetical protein -
  PQ460_RS10955 (PQ460_10955) - 2426472..2428457 (+) 1986 WP_274172691.1 AAA family ATPase -
  PQ460_RS10960 (PQ460_10960) - 2428454..2429539 (+) 1086 WP_274172692.1 hypothetical protein -
  PQ460_RS10965 (PQ460_10965) - 2429539..2430246 (+) 708 WP_274172693.1 MBL fold metallo-hydrolase -
  PQ460_RS10970 (PQ460_10970) - 2430270..2430725 (+) 456 WP_274172694.1 hypothetical protein -
  PQ460_RS10975 (PQ460_10975) - 2430838..2431143 (+) 306 WP_274172695.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17705.50 Da        Isoelectric Point: 5.3022

>NTDB_id=788203 PQ460_RS10945 WP_274172689.1 2425661..2426143(+) (ssbA) [Paenibacillus sp. KACC 21273]
MLNRVILIGRLTKDPELRYTPTGVAVAQFTLAIDRPFTSQGGEREADFIPIVVWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSRDGANSNSGGKREESSYGSGHSGNQSSNGGARNHQDPFSDDGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=788203 PQ460_RS10945 WP_274172689.1 2425661..2426143(+) (ssbA) [Paenibacillus sp. KACC 21273]
ATGTTAAATCGTGTGATTTTGATTGGACGACTAACCAAAGATCCCGAGCTGCGTTATACACCAACAGGAGTCGCTGTCGC
TCAGTTTACGCTGGCGATTGATCGACCGTTTACGAGCCAAGGAGGAGAACGCGAAGCGGATTTTATTCCTATTGTCGTGT
GGAGACAGCTGGCAGAAACCTGTGCGAATTATTTGCGCAAAGGTCGCCTAACAGCCGTTGAAGGTCGGATCCAGGTACGA
AATTATGAGAATAACGAAGGAAAACGTGTCTATGTCACTGAAGTGATCGCGGATAATGTTCGATTCCTAGAATCCAGTCG
TGACGGCGCAAATAGCAACAGTGGAGGGAAGCGTGAAGAATCCTCCTATGGTAGCGGTCATAGTGGGAATCAAAGTAGTA
ATGGTGGAGCACGTAATCACCAAGATCCGTTTTCAGATGACGGAAAGCCAATCGACATTTCGGATGATGATTTACCATTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.069

100

0.606
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.544
  ssb Neisseria meningitidis MC58

34.637

100

0.388
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

65

0.375
  ssb Neisseria gonorrhoeae MS11

32.955

100

0.363