Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSR30_RS20715 Genome accession   NZ_CP117874
Coordinates   4617940..4619466 (+) Length   508 a.a.
NCBI ID   WP_039546763.1    Uniprot ID   -
Organism   Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4612940..4624466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR30_RS20695 (PSR30_20695) - 4614357..4615283 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  PSR30_RS20700 (PSR30_20700) ilvM 4615308..4615568 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  PSR30_RS20705 (PSR30_20705) ilvG 4615647..4617293 (-) 1647 WP_039474303.1 acetolactate synthase 2 catalytic subunit -
  PSR30_RS20710 (PSR30_20710) ilvL 4617434..4617532 (-) 99 WP_071531109.1 ilv operon leader peptide -
  PSR30_RS20715 (PSR30_20715) comM 4617940..4619466 (+) 1527 WP_039546763.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSR30_RS20720 (PSR30_20720) - 4619523..4619861 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  PSR30_RS20725 (PSR30_20725) hdfR 4619982..4620809 (+) 828 WP_040033268.1 HTH-type transcriptional regulator HdfR -
  PSR30_RS20730 (PSR30_20730) yjfF 4620832..4621794 (-) 963 WP_274214522.1 galactofuranose ABC transporter, permease protein YjfF -
  PSR30_RS20735 (PSR30_20735) ytfT 4621794..4622804 (-) 1011 WP_138256315.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  PSR30_RS20740 (PSR30_20740) ytfR 4622791..4624311 (-) 1521 WP_274214523.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55489.13 Da        Isoelectric Point: 6.5674

>NTDB_id=788184 PSR30_RS20715 WP_039546763.1 4617940..4619466(+) (comM) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIDEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=788184 PSR30_RS20715 WP_039546763.1 4617940..4619466(+) (comM) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGTTCCGACATGACGCCCGTTCCACCGATCGACGA
AGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCTGGAGAAATCTCGC
TCGCCCACAACGGCGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTATGCTACCCAGCACGGGTGCAGCTCGTTGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACATTAT
CAAGGCGAAAGCAGCGCGACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTGCTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATAGCTGACCTCGGCGACCGGGAT
AATATTGAAAGGAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467