Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PRJ39_RS24955 Genome accession   NZ_CP117873
Coordinates   5889853..5891379 (+) Length   508 a.a.
NCBI ID   WP_394538647.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain Lj46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5884853..5896379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRJ39_RS24925 (PRJ39_23950) - 5885019..5886470 (+) 1452 WP_394538644.1 S41 family peptidase -
  PRJ39_RS24930 (PRJ39_23955) - 5886613..5887266 (-) 654 WP_091804944.1 response regulator transcription factor -
  PRJ39_RS24935 (PRJ39_23960) - 5887295..5888734 (-) 1440 WP_394538645.1 HAMP domain-containing protein -
  PRJ39_RS24940 (PRJ39_23965) - 5888905..5889243 (-) 339 WP_057945893.1 P-II family nitrogen regulator -
  PRJ39_RS24945 (PRJ39_23970) - 5889230..5889463 (+) 234 WP_394538646.1 hypothetical protein -
  PRJ39_RS24950 (PRJ39_23975) - 5889576..5889842 (+) 267 WP_091804842.1 accessory factor UbiK family protein -
  PRJ39_RS24955 (PRJ39_23980) comM 5889853..5891379 (+) 1527 WP_394538647.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PRJ39_RS24960 (PRJ39_23985) - 5891681..5892511 (+) 831 WP_091804892.1 AraC family transcriptional regulator -
  PRJ39_RS24965 (PRJ39_23990) - 5892827..5892979 (+) 153 WP_175486189.1 hypothetical protein -
  PRJ39_RS24970 (PRJ39_23995) - 5893203..5894219 (+) 1017 WP_394538648.1 alpha/beta fold hydrolase -
  PRJ39_RS24975 (PRJ39_24000) - 5894455..5895525 (-) 1071 WP_394538649.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54078.82 Da        Isoelectric Point: 8.7332

>NTDB_id=788164 PRJ39_RS24955 WP_394538647.1 5889853..5891379(+) (comM) [Lysobacter enzymogenes strain Lj46]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNIVGLPEAAVRESKDRVRAAIASAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPALADCEFLGELGLTGELRAIDGVLPAALAAAEAGRRLVVPAGNGSEAALASRVEARTARTL
SEVCAMLCERASLPRAVAPPLARAPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPSRWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWQRRALEVLREP
LESGAVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASARCRCTEDIIRRYRARISGPLLDRIDLHIEVPRLPPAALRP
DQPEGESSAAIRERVSAARQRQAERSGRTNARLDHAQTNQHCRLAERDQALLERAVDGLQLSARSMHRILRVARTIADLA
GCEHIATAHLTEAIGYRRADRDSATRAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=788164 PRJ39_RS24955 WP_394538647.1 5889853..5891379(+) (comM) [Lysobacter enzymogenes strain Lj46]
ATGAATCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGAGTGCGTGCGCCCGCGGTGCGCGTCGAGGTGCACCTGGGCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGTCCAAGGACCGGGTGCGCGCGGCGATCG
CCTCGGCGCAATACGAATTCCCGCAACGACGCATCACCGTCAACCTCGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TACGACCTCGCCATCGCGCTCGGCATCCTCGCCGCGAGCGGGCAGCTGCCGCTGCCGGCCCTGGCCGATTGCGAATTCCT
CGGCGAGCTCGGCCTCACCGGCGAGCTGCGCGCGATCGACGGCGTACTGCCGGCGGCGCTGGCCGCGGCCGAGGCTGGGC
GCCGGCTGGTGGTGCCGGCCGGCAACGGCAGCGAGGCGGCGCTGGCCAGCCGGGTCGAAGCGCGCACCGCGCGCACGCTG
TCGGAGGTCTGCGCGATGCTGTGCGAGCGCGCGTCGCTGCCGCGCGCCGTGGCCCCGCCGCTGGCGCGCGCGCCGGAACT
GGACATGCGCGATGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCATCTGCTGC
TGATCGGCCCTCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAAGACGAA
GCGCTGGAAACCGCGGCGATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGACCCGTCGCGCTGGCGCCAGCG
TCCGTTCCGCGCCCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCGCCGATCCTCGGCCCGGCGAAATCT
CGCTGGCGCACCACGGGGTGTTGTTCCTCGATGAGCTGCCCGAATGGCAGCGGCGCGCGCTGGAAGTGTTGCGCGAGCCG
CTGGAGTCGGGCGCGGTCACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGCTTCCAACTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACGCCAGCGCGCGCTGCCGCTGCACCGAGGACATCATCCGCCGCTACCGCG
CGCGCATTTCCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGCCGCGGCTGCCGCCGGCGGCGCTGCGCCCC
GACCAGCCCGAAGGCGAATCCAGCGCCGCGATCCGCGAGCGCGTGAGCGCGGCGCGGCAACGCCAGGCCGAGCGCAGCGG
CCGCACCAATGCGCGCCTGGACCACGCCCAGACCAACCAGCATTGCCGCCTGGCCGAACGCGACCAGGCACTGCTGGAAC
GCGCGGTCGACGGCCTACAGTTGTCGGCGCGCTCGATGCACCGGATCTTGCGGGTCGCGCGCACCATCGCCGACCTCGCC
GGCTGCGAGCACATCGCCACCGCGCACCTGACCGAAGCCATCGGTTACCGGCGGGCCGATCGCGACAGCGCGACGCGGGC
GGCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.672

99.016

0.541
  comM Vibrio campbellii strain DS40M4

53.28

99.016

0.528
  comM Glaesserella parasuis strain SC1401

51.969

100

0.52
  comM Haemophilus influenzae Rd KW20

52.381

99.213

0.52
  comM Legionella pneumophila str. Paris

51.297

98.622

0.506
  comM Legionella pneumophila strain ERS1305867

51.297

98.622

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.597

100

0.459