Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PO765_RS02485 Genome accession   NZ_CP117848
Coordinates   540160..541740 (-) Length   526 a.a.
NCBI ID   WP_331692353.1    Uniprot ID   -
Organism   Pandoraea sputorum strain B09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 535160..546740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO765_RS02460 - 535643..536992 (+) 1350 WP_039402096.1 sigma-54 dependent transcriptional regulator -
  PO765_RS02465 - 537054..537716 (-) 663 WP_224786738.1 carbonic anhydrase -
  PO765_RS02470 - 538112..538636 (-) 525 WP_039395336.1 TlpA disulfide reductase family protein -
  PO765_RS02475 - 538733..539464 (-) 732 WP_224786737.1 hypothetical protein -
  PO765_RS02480 - 539562..540110 (+) 549 WP_322881302.1 hypothetical protein -
  PO765_RS02485 comM 540160..541740 (-) 1581 WP_331692353.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PO765_RS02490 - 542167..542415 (-) 249 WP_039395339.1 accessory factor UbiK family protein -
  PO765_RS02495 - 542811..543656 (+) 846 WP_039395342.1 TorF family putative porin -
  PO765_RS02500 - 543670..544008 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  PO765_RS02505 amt 544034..545569 (+) 1536 WP_331692363.1 ammonium transporter -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 55513.52 Da        Isoelectric Point: 8.0653

>NTDB_id=787893 PO765_RS02485 WP_331692353.1 540160..541740(-) (comM) [Pandoraea sputorum strain B09]
MSLAVVSSRAITGMSARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRPIRGGLAMASAMASEPSTRALVLPAGSAQEAALVEEATVYGAR
ALLDVCAHLAAPDVAIPLPRAVVQGSPNDRAADIAGGEIDVARVRAPGATPPGSSIADMIDIKGQEHAKRALEVAAAGGH
HLLLYGPPGTGKSMLATRLVGLLPSLCKSQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSTPRPGEIS
LAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSDAVARYRN
RLSGPLLDRIDLHVEVPALSAETFAAPATGERTEVVAMRVRHAQTRQLKRQGQLNCGLSNRALEAQCPLGPAAQEVLHRA
VTQHHWSARTYHRVLRVARTVADLAECDAIDASHIAEAVQYREAPT

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=787893 PO765_RS02485 WP_331692353.1 540160..541740(-) (comM) [Pandoraea sputorum strain B09]
ATGTCATTGGCAGTGGTGAGCAGCCGCGCGATCACCGGTATGTCGGCACGTCCGGTGACAGTCGAAGTCCATCTGGCGAA
CGGCTTGCCGGGACTGTCGCTGGTGGGGCTGCCCGATACCGAAGTGAAGGAAAGTCGCGAGCGGGTGCGCTCGGCGTTGC
AGAACAGCCGGTTTGAATTCCCAGCGCGACGCATCACCGTCAATCTGGCCCCGGCCGATCTGCCGAAGGCGTCGGGCTGT
TTTGATCTACCGATTGCGCTCGGCATTCTGGCGGCGAGCGGTCAGTTACCGGAGGCAGGGCTGCGCACGCACGAGTTCGC
GGGCGAGTTGTCGCTTACCGGCGAGTTGCGCCCTATTCGCGGTGGCCTGGCGATGGCGAGCGCGATGGCATCGGAGCCGT
CGACACGCGCGCTCGTGCTTCCCGCCGGGAGCGCACAAGAAGCTGCGCTGGTGGAGGAAGCCACGGTCTATGGCGCACGC
GCTTTACTCGACGTCTGCGCCCACCTCGCGGCGCCGGATGTCGCGATACCGCTCCCACGTGCCGTGGTGCAGGGCTCGCC
TAACGACAGGGCAGCGGACATAGCGGGGGGCGAAATCGACGTCGCGCGAGTCAGGGCGCCGGGCGCCACGCCCCCGGGCA
GCAGCATCGCGGACATGATCGACATCAAAGGGCAGGAGCACGCCAAACGAGCGCTGGAAGTGGCGGCGGCGGGTGGCCAT
CACCTTTTGCTTTACGGGCCACCCGGTACGGGCAAATCGATGCTGGCGACGCGGCTCGTCGGCCTGTTGCCGTCGCTCTG
CAAATCTCAGGCCGTGGAAGCGGCAACGCTCGCAAGTCTGAGCGCGCAGGGCTTCGATATGCGGCATTGGGGACGCCGGC
CCTTTCGTGCGCCGCATCACACGGCATCGGCGGCGGCCCTTGTGGGGGGCGGGAGCACGCCGCGACCGGGGGAAATCAGT
CTGGCGCATCGCGGCGTGCTGTTCCTCGACGAACTGCCGGAATTTCAGCGTCGTGTCCTGGAAGTGCTGCGTGAACCACT
GGAACTGGGGCATGTCACGATTTCGCGCGCCGGTGGGCATGCGACGTTTCCCGCGGCATTTCAACTGGTGGCGGCAATGA
ACCCGTGTCCCTGCGGTGACCTGGGGCACCCGTCACGCAACTGCCGATGCACGAGTGACGCGGTAGCGCGTTACCGCAAC
CGGCTCTCCGGGCCGTTGCTCGACCGCATCGACCTGCACGTGGAAGTGCCTGCACTCAGCGCGGAAACATTCGCCGCTCC
AGCCACCGGCGAGCGCACTGAAGTCGTGGCCATGCGAGTACGACATGCGCAGACGCGCCAGCTAAAGCGTCAGGGTCAGT
TGAACTGCGGTCTGTCGAATCGTGCGCTGGAAGCGCAATGTCCACTGGGACCGGCGGCGCAGGAGGTGCTGCACCGTGCG
GTGACGCAACACCATTGGTCGGCCCGCACCTACCACCGGGTGTTGCGCGTGGCACGCACTGTGGCGGACCTCGCAGAATG
CGACGCAATCGATGCGTCTCACATCGCCGAGGCGGTGCAGTATCGAGAAGCGCCGACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.052

99.43

0.508
  comM Vibrio campbellii strain DS40M4

48.948

99.43

0.487
  comM Haemophilus influenzae Rd KW20

48.381

99.81

0.483
  comM Glaesserella parasuis strain SC1401

48.473

99.62

0.483
  comM Legionella pneumophila str. Paris

47.238

99.81

0.471
  comM Legionella pneumophila strain ERS1305867

47.238

99.81

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.776

100

0.428