Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PUP35_RS21220 Genome accession   NZ_CP117838
Coordinates   4458784..4460304 (+) Length   506 a.a.
NCBI ID   WP_127732614.1    Uniprot ID   -
Organism   Enterobacter sp. S-33     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4453784..4465304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP35_RS21195 ilvE 4455350..4456279 (-) 930 WP_127732610.1 branched-chain-amino-acid transaminase -
  PUP35_RS21200 ilvM 4456298..4456561 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  PUP35_RS21205 ilvG 4456558..4458204 (-) 1647 WP_248175578.1 acetolactate synthase 2 catalytic subunit -
  PUP35_RS21210 ilvX 4458207..4458257 (-) 51 WP_166792073.1 peptide IlvX -
  PUP35_RS21215 ilvL 4458344..4458442 (-) 99 WP_071844500.1 ilv operon leader peptide -
  PUP35_RS21220 comM 4458784..4460304 (+) 1521 WP_127732614.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PUP35_RS21225 - 4460336..4460674 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  PUP35_RS21230 hdfR 4460793..4461614 (+) 822 WP_133295337.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54981.93 Da        Isoelectric Point: 6.8203

>NTDB_id=787889 PUP35_RS21220 WP_127732614.1 4458784..4460304(+) (comM) [Enterobacter sp. S-33]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGLYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVITDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=787889 PUP35_RS21220 WP_127732614.1 4458784..4460304(+) (comM) [Enterobacter sp. S-33]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTTGAGGTTCATTTGAGTAA
TGGGCTACCCGGACTCACGCTTGTCGGTTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTTGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCAGGAGCGCTGGAGGCCATACGTGCCGGGC
GGCAAATCATTGTCGCAAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCGGAGGAGTGTGACGATGTTATAACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGGCACAATCTTC
TGTTGATTGGTCCACCAGGTACGGGGAAAACGATGCTGGCGAGCAGGTTGAGTGGATTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACCGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCACTGGCCC
ATAATGGAATTCTATTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTTGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCTCCGCCGGGTCTGCTCAGGCAGACGGGTATCACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCGGCCCAGACGCGACAGTATGCTCGTCAGAACAGGCTAAATGCCCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCCCTTAACAGTGAGGATGCGGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439