Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUP35_RS01515 Genome accession   NZ_CP117838
Coordinates   330797..331327 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter sp. S-33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 325797..336327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP35_RS01495 aphA 326121..326834 (+) 714 WP_127729274.1 acid phosphatase AphA -
  PUP35_RS01500 - 326948..327364 (+) 417 WP_111964202.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PUP35_RS01505 - 327367..327720 (+) 354 WP_111964201.1 MmcQ/YjbR family DNA-binding protein -
  PUP35_RS01510 uvrA 327724..330546 (-) 2823 WP_274241756.1 excinuclease ABC subunit UvrA -
  PUP35_RS01515 ssb 330797..331327 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PUP35_RS01520 - 331389..331670 (-) 282 WP_008503385.1 YjcB family protein -
  PUP35_RS01525 - 332314..333879 (+) 1566 WP_111964200.1 EAL domain-containing protein -
  PUP35_RS01530 soxS 333886..334212 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  PUP35_RS01535 soxR 334311..334769 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  PUP35_RS01540 - 335058..335729 (+) 672 WP_115876910.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=787872 PUP35_RS01515 WP_023310055.1 330797..331327(+) (ssb) [Enterobacter sp. S-33]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=787872 PUP35_RS01515 WP_023310055.1 330797..331327(+) (ssb) [Enterobacter sp. S-33]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGAGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACTGAAGTAGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCTGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364