Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PQG02_RS03815 Genome accession   NZ_CP117768
Coordinates   751329..751694 (+) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc sp. UHCC 0926     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746329..756694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQG02_RS03800 (PQG02_03875) tilS 746516..747511 (+) 996 WP_273766898.1 tRNA lysidine(34) synthetase TilS -
  PQG02_RS03805 (PQG02_03880) hmpF 747650..749413 (-) 1764 WP_273766900.1 pilus motility taxis protein HmpF -
  PQG02_RS03810 (PQG02_03885) - 749798..750976 (+) 1179 WP_273766902.1 response regulator -
  PQG02_RS03815 (PQG02_03890) pilH 751329..751694 (+) 366 WP_069073698.1 response regulator Machinery gene
  PQG02_RS03820 (PQG02_03895) - 751708..752238 (+) 531 WP_273766906.1 chemotaxis protein CheW -
  PQG02_RS03825 (PQG02_03900) - 752253..755198 (+) 2946 WP_273766908.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=787571 PQG02_RS03815 WP_069073698.1 751329..751694(+) (pilH) [Nostoc sp. UHCC 0926]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=787571 PQG02_RS03815 WP_069073698.1 751329..751694(+) (pilH) [Nostoc sp. UHCC 0926]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCGACTGGCCTAAC
AGTGACCCATGCCAGTGACGGATTAGAAGCATTGGAGGCAATTCAAATAGCACCTCCCGATTTAGTAGTATTGGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTTATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGCATGAAGCAGGGTGCAGACGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372