Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OG382_RS26555 Genome accession   NZ_CP130722
Coordinates   5818395..5818829 (+) Length   144 a.a.
NCBI ID   WP_405681705.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5813395..5823829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS26545 (OG382_26575) - 5815828..5816583 (+) 756 WP_266746145.1 hypothetical protein -
  OG382_RS26550 (OG382_26580) - 5816692..5817537 (+) 846 WP_266746144.1 DegV family protein -
  OG382_RS26555 comEA/celA/cilE 5818395..5818829 (+) 435 WP_405681705.1 helix-hairpin-helix domain-containing protein Machinery gene
  OG382_RS26560 (OG382_26590) - 5818826..5821429 (+) 2604 WP_266746142.1 ComEC/Rec2 family competence protein -
  OG382_RS26565 (OG382_26595) - 5821640..5822524 (+) 885 WP_266746141.1 YceI family protein -
  OG382_RS26570 (OG382_26600) - 5822549..5822794 (-) 246 WP_266746140.1 hypothetical protein -
  OG382_RS26575 (OG382_26605) - 5822878..5823796 (-) 919 Protein_5244 aldo/keto reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14440.37 Da        Isoelectric Point: 8.7917

>NTDB_id=787373 OG382_RS26555 WP_405681705.1 5818395..5818829(+) (comEA/celA/cilE) [Streptomyces sp. NBC_01238]
MSGKVRLPGIHQLPSGARVADAIRAAGGARPGVDLAGLNRARVVMDGEQIVVGAPPGPPVMGGTGGAATGGTGTGSGGTT
TGTVSLNLATVEQLDSLPGVGPVLAQRIVDYRTQHGGFRSVDELREVNGIGDRRFADLQPLVVP

Nucleotide


Download         Length: 435 bp        

>NTDB_id=787373 OG382_RS26555 WP_405681705.1 5818395..5818829(+) (comEA/celA/cilE) [Streptomyces sp. NBC_01238]
GTGAGCGGGAAGGTGCGACTGCCGGGGATCCATCAACTGCCGTCCGGCGCACGGGTCGCCGACGCGATCCGGGCCGCGGG
CGGAGCCCGGCCCGGTGTCGACCTCGCCGGGCTCAACCGAGCGCGGGTGGTCATGGACGGGGAGCAGATCGTGGTGGGCG
CTCCACCGGGCCCTCCGGTCATGGGCGGGACGGGAGGTGCCGCCACGGGCGGCACCGGCACCGGCAGCGGCGGCACCACA
ACGGGAACGGTCAGCCTCAATCTGGCGACCGTCGAACAACTCGACTCCCTGCCCGGCGTCGGTCCGGTTCTCGCCCAGCG
CATCGTCGACTATCGCACCCAGCACGGCGGTTTCCGTTCCGTCGACGAACTCCGCGAAGTCAACGGGATCGGCGATCGCC
GGTTCGCCGACCTCCAGCCTCTGGTGGTGCCATGA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(2-52)

Helix-hairpin-helix motif (HHH_3)

(82-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

38.028

98.611

0.375
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.028

98.611

0.375
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.028

98.611

0.375
  comEA/celA/cilE Streptococcus pneumoniae D39

38.028

98.611

0.375
  comEA/celA/cilE Streptococcus pneumoniae R6

38.028

98.611

0.375
  comEA Streptococcus thermophilus LMD-9

38.806

93.056

0.361