Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PGW99_RS00910 Genome accession   NZ_CP117520
Coordinates   175921..177507 (-) Length   528 a.a.
NCBI ID   WP_273779381.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 170921..182507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS00895 gpmI 171770..173317 (+) 1548 WP_273778210.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  PGW99_RS00900 - 173334..174509 (+) 1176 WP_273778211.1 S41 family peptidase -
  PGW99_RS00905 pilR 174512..175924 (-) 1413 WP_273778212.1 sigma-54 dependent transcriptional regulator Regulator
  PGW99_RS00910 pilS 175921..177507 (-) 1587 WP_273779381.1 PAS domain-containing sensor histidine kinase Regulator
  PGW99_RS00915 - 177519..178154 (-) 636 WP_273778213.1 response regulator -
  PGW99_RS00920 pbpG 178370..179425 (+) 1056 WP_273779382.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PGW99_RS00925 thrC 179521..180666 (-) 1146 WP_273778214.1 threonine synthase -
  PGW99_RS00930 - 180721..182022 (-) 1302 WP_273778215.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 60182.06 Da        Isoelectric Point: 7.4114

>NTDB_id=786207 PGW99_RS00910 WP_273779381.1 175921..177507(-) (pilS) [Acinetobacter sp. GSS19]
MMLAIPASLFQTIYRLAIHYSIYRLIIALSLTFIFMFTQGQLGNYYQQPTLYFYTAVFYALISLFQLVSLKFLPFSTQRQ
LVLILACDVLMLSILTFAVGSPSLHISLLFVITIFSASLLLDQRKALIITLIAVISVVYQHFVGSVLDFSSLNNVGHNAL
LAFLFFVVYGLSQLAVQRFQILQNLHLHQSQEFHQLQNINRYILEQIEVGYLVLDAACHIVLVNPAACHLLGILPTFAHQ
KQPLSEVQPDLWQLLKFDHFKHGEKFQFESQFSHYTIQIQLQKLITPQQSLSLLVLQDAQKINQQVQQLKLAALGQLTAS
IAHEIRNPLAAITQANQLLLDSDAEQQRMLTQMIAKQANRIDVIIKDTLNMARHKGTFPERLQLKLFLTECLREDFSDIQ
QQIHLDLQQDCSVVFDPLQLRQVLVNLIRNAIRHNRASDFIQLRVSTHEQGVWIDVIDFGSGVQKQDISRLFQPFFSTEI
NGTGLGLYLSRSLCEANQAKLSYIEQPQGACFRIECSTNHLNQVLQGS

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=786207 PGW99_RS00910 WP_273779381.1 175921..177507(-) (pilS) [Acinetobacter sp. GSS19]
CTGATGCTTGCGATTCCAGCTTCCCTATTTCAGACGATTTATCGTTTAGCTATCCATTACAGTATTTATCGTCTGATTAT
TGCCCTAAGCCTGACGTTCATTTTTATGTTCACCCAAGGGCAACTCGGAAATTATTATCAGCAACCCACCTTATATTTTT
ATACCGCAGTTTTTTATGCCCTGATTAGCTTATTCCAGCTGGTCAGTCTCAAATTTCTGCCTTTTTCTACACAGCGACAA
CTGGTACTCATTCTAGCTTGTGATGTTCTGATGCTGAGCATCCTGACCTTTGCGGTCGGTAGTCCAAGTTTACATATCAG
TCTGCTTTTTGTGATTACCATCTTTTCAGCCAGCCTCCTGCTGGATCAGCGTAAGGCCCTGATTATCACGCTGATTGCCG
TTATTAGTGTGGTTTATCAACATTTTGTCGGCAGTGTATTGGATTTCTCTAGTCTTAATAATGTCGGTCACAATGCCCTT
TTGGCTTTTTTGTTTTTTGTGGTGTATGGCTTGAGTCAATTGGCCGTACAACGCTTCCAGATTTTGCAGAACCTGCATCT
GCATCAGTCACAGGAATTTCATCAACTGCAGAATATCAACCGCTATATTCTGGAACAAATTGAGGTGGGTTATCTGGTGC
TCGATGCAGCTTGTCATATTGTGCTGGTAAATCCAGCAGCGTGCCATCTGCTCGGAATCCTGCCCACGTTTGCCCATCAA
AAACAACCTTTGTCTGAAGTCCAACCTGATCTATGGCAACTGCTCAAATTTGACCATTTTAAACATGGGGAAAAATTTCA
GTTTGAATCCCAATTTTCGCACTACACCATCCAGATTCAGTTACAGAAACTGATCACACCCCAGCAAAGTCTGAGTTTAT
TGGTGCTACAGGATGCACAAAAAATCAACCAGCAGGTTCAACAACTCAAACTCGCGGCCCTAGGACAACTGACTGCCAGC
ATTGCACATGAAATACGTAACCCTTTGGCGGCCATTACTCAGGCCAATCAATTGTTATTAGATAGTGATGCCGAACAGCA
GCGTATGCTCACACAGATGATTGCCAAACAGGCCAATCGTATCGATGTCATTATTAAAGACACGCTCAATATGGCACGAC
ACAAAGGGACTTTCCCAGAAAGGCTGCAATTAAAACTCTTCCTCACGGAATGCCTGCGGGAAGACTTTTCTGATATACAG
CAGCAGATTCATTTAGACCTGCAACAAGACTGCTCGGTCGTGTTTGATCCTCTGCAACTCCGTCAGGTTTTAGTCAATCT
GATCCGTAATGCGATTCGACATAATCGTGCATCAGACTTTATTCAATTACGGGTCAGTACGCATGAGCAAGGGGTCTGGA
TAGATGTGATTGATTTTGGCTCAGGGGTTCAGAAACAGGATATTTCACGTTTATTCCAGCCATTTTTCAGTACCGAAATT
AACGGAACTGGTTTAGGATTATACTTATCTCGCAGTTTATGCGAAGCCAATCAAGCCAAACTGAGCTACATTGAACAACC
ACAAGGAGCATGTTTCCGCATTGAATGCTCCACAAATCATTTGAATCAGGTTTTGCAGGGATCATGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(201-234)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.336

98.106

0.563