Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PGW99_RS00825 Genome accession   NZ_CP117520
Coordinates   158864..160351 (-) Length   495 a.a.
NCBI ID   WP_273778191.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 153864..165351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS00795 - 155227..155607 (-) 381 WP_273778183.1 hypothetical protein -
  PGW99_RS00800 - 155717..156115 (+) 399 WP_273778185.1 MAPEG family protein -
  PGW99_RS00805 ppa 156242..156769 (+) 528 WP_273778186.1 inorganic diphosphatase -
  PGW99_RS00810 - 156943..157785 (+) 843 WP_273778188.1 hypothetical protein -
  PGW99_RS00815 - 157812..157991 (+) 180 WP_273778189.1 hypothetical protein -
  PGW99_RS00820 - 158011..158820 (+) 810 WP_273778190.1 TorF family putative porin -
  PGW99_RS00825 comM 158864..160351 (-) 1488 WP_273778191.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PGW99_RS00830 - 160418..160645 (-) 228 WP_273778193.1 accessory factor UbiK family protein -
  PGW99_RS00835 glnK 160922..161260 (+) 339 WP_273778194.1 P-II family nitrogen regulator -
  PGW99_RS00840 - 161320..162708 (+) 1389 WP_273778196.1 ammonium transporter -
  PGW99_RS00845 nrdR 162852..163304 (+) 453 WP_273778197.1 transcriptional regulator NrdR -
  PGW99_RS00850 ribD 163317..164402 (+) 1086 WP_273778198.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54009.01 Da        Isoelectric Point: 8.5927

>NTDB_id=786205 PGW99_RS00825 WP_273778191.1 158864..160351(-) (comM) [Acinetobacter sp. GSS19]
MSFAKIQTRSLLGLQAPPIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPSKRLTINLAPADLPKEGAR
LDLAIALGILIASGQLPEGVTDEFEFIGELALDGHLRPVSGILSIAMACQHSGRQLMLPALNASEAAQLPDFPVYPVQHL
KQVCAHFLKQEKICAVHAPLQSVEEPQAPDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLAGILPPLSA
QENLQVARIYSIANTAYRFGQRPFRAPHHTASAIALVGGGSSPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLIAAMNPCPCGYAFHQDKRCQCSTEAIKRYQNRISGPLLDRIDLHIDVPPLSSQELQSTAPVE
NSASVRSRVVQAYERQIQRQNGLNHQLSPQQLQRFASLDSAAQHLIDLAQQRLNLSARGYHRVLRVARTIADLAESEQIQ
NVHLSEALSYRGSQT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=786205 PGW99_RS00825 WP_273778191.1 158864..160351(-) (comM) [Acinetobacter sp. GSS19]
ATGTCTTTTGCCAAAATTCAGACCCGCAGCCTGTTGGGGCTGCAAGCCCCTCCAATTGAGGTTGAAGTCCATGTCAGCCA
GGGTTTACCGTCATTAACAATTGTCGGATTGCCAGAAGCAGCGGTACGCGAAAGCAAGGATCGGGTACGTTCGGCAATTT
TGAACAGTGGTTTTCAGTTTCCGAGTAAACGCCTGACGATTAATCTGGCACCTGCAGATCTGCCCAAAGAAGGCGCACGT
CTGGATCTGGCGATTGCGTTGGGCATCCTGATTGCTTCGGGACAATTACCTGAAGGGGTGACAGATGAGTTTGAATTTAT
TGGCGAACTGGCCCTTGATGGGCACCTCCGTCCGGTCAGCGGGATTTTAAGTATCGCGATGGCCTGTCAGCACAGTGGTC
GCCAACTGATGTTGCCCGCTTTGAATGCAAGTGAGGCAGCACAATTACCGGATTTCCCGGTTTATCCGGTTCAGCACTTG
AAACAAGTCTGTGCACATTTCTTAAAACAAGAAAAAATTTGTGCCGTTCATGCACCACTGCAATCCGTCGAAGAACCGCA
AGCCCCCGATCTGGCCGATGTCAAAGGTCAGTTACGGCCGCGTCGTGCGCTGGAAATAGCAGCCGCTGGGGGCCATTCGC
TGCTTTTTCGCGGCCCACCTGGCACTGGAAAAACCTTGCTGGCCTCACGACTTGCCGGTATTTTGCCACCGCTCTCTGCA
CAGGAAAATTTGCAGGTGGCCCGTATCTATTCGATTGCCAATACTGCCTACCGTTTTGGACAACGTCCTTTCCGTGCACC
ACACCATACGGCTTCTGCAATTGCCTTGGTCGGCGGAGGTTCTTCCCCCAAACCGGGAGAAATTACTTTGGCACATTTAG
GTGTACTGTTTCTGGATGAGTTACCAGAATTCGATCGCAAGGTACTTGAAGTCTTACGCCAGCCACTAGAGTCCAAGGAA
ATTGTCATTTCGCGTGCTTCGCGACAAATGACCTTTCCGGCCAACTTTCAGTTAATTGCCGCCATGAATCCGTGTCCTTG
CGGTTATGCTTTCCATCAGGACAAACGCTGCCAATGTTCAACCGAAGCGATTAAACGCTATCAGAACCGGATCTCGGGAC
CTCTCCTAGACCGGATCGATTTGCATATTGATGTCCCGCCACTCTCTAGTCAGGAGTTACAATCAACCGCTCCGGTAGAA
AACTCAGCCAGCGTTCGTAGCCGTGTCGTGCAGGCTTATGAGCGACAAATACAACGGCAAAATGGACTGAATCATCAACT
GTCTCCGCAGCAACTGCAGCGCTTTGCCTCACTCGATTCGGCAGCGCAACATTTAATTGACCTCGCTCAACAGCGTTTAA
ATTTATCCGCCCGCGGCTATCATCGGGTGTTGCGTGTTGCCCGTACTATTGCCGATTTGGCAGAAAGTGAACAGATCCAG
AATGTGCATTTAAGTGAAGCATTGTCCTATCGCGGCAGCCAGACATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Vibrio cholerae strain A1552

49.697

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.515

100

0.495
  comM Legionella pneumophila str. Paris

48.515

100

0.495
  comM Vibrio campbellii strain DS40M4

49.495

100

0.495
  comM Glaesserella parasuis strain SC1401

48.497

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.149

100

0.461